maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Simulate a fresh-clone reproduction of the entire pipeline and diff the new outputs against the committed ones. Catches drift before paper submission or release.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Stage, commit, create PR, and merge to main. Use for the standard commit-PR-merge cycle.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Challenge a slide deck design with 5-7 specific pedagogical questions. Checks ordering, prerequisites, gaps, alternatives, notation conflicts, cognitive load, and book readiness.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Interactive interview to formalize a research idea into a structured specification with hypotheses and empirical strategy.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Structured literature search and synthesis with citation extraction and gap identification.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Run a holistic narrative review on a Quarto report or Markdown document. Checks reader prerequisites, worked examples, notation clarity, structural arc, and pacing.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Run the proofreading protocol on lecture files. Checks grammar, typos, overflow, consistency, and academic writing quality. Produces a report without editing files.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Patterns for Bayesian inference in R using brms, including multilevel models, DAG validation, and marginal effects. Use when performing Bayesian analysis.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
End-to-end R workflow for empirical analysis — load, explore, clean, estimate, and produce publication output. Anchored to the project's pipeline stages and conventions.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
R object-oriented programming guide for S7, S3, S4, and vctrs. Use when designing R classes or choosing an OOP system.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
R package development guide covering dependencies, API design, testing, and documentation. Use when developing R packages.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Render a Quarto report (knitr / R engine) to HTML / PDF / DOCX. Performs freshness check on included tables/figures, verifies that Quarto + R are available, and validates numerical claims before rendering.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Apply the replication protocol to a paper. Inventory the replication package, record gold-standard targets with tolerances, translate the analysis into this project's R pipeline, and report a tolerance-by-tolerance comparison.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Generate structured research questions, testable hypotheses, and empirical strategies from a topic or dataset.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Comprehensive manuscript review covering argument structure, econometric specification, citation completeness, and potential referee objections.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Run a structured code-quality review on an R script. Delegates to the r-reviewer subagent; produces a report covering reproducibility, logging, naming, magic numbers, table/figure quality, and convention adherence.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Metaprogramming framework that powers tidyverse data-masking.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Execute the full R pipeline via R/00main.R. Runs every stage in dependency order, aborts on first error, prints stage timings, and reports the final output tree.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Execute a single R script in batch mode via the project wrapper. Captures the log, surfaces any errors, and reports exit code and output paths.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Test-driven development workflow for R using testthat 3. Use when writing new functions, fixing bugs, or refactoring analysis code.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Validate bibliography entries against citations in Quarto reports and R scripts. Find missing entries, unused references, and likely typos.
maxwell2732/codex-r-empirical-research
Skill Claude CodeCodex
Scan an R log file for errors, warnings, and silent failures, and (optionally) verify that a numerical claim appears in the log. Mode A scans; Mode B verifies a specific claim.
maxwell2732/codex-r-empirical-research
Instructions file CodexOpenCode
AGENTS.md instructions for maxwell2732/codex-r-empirical-research, covering agents.md - codex guide for this r research pipeline, repository purpose, codex operating rules, commands and run one r script on windows.
maxwell2732/codex-r-empirical-research
Instructions file
Claude Code instructions for maxwell2732/codex-r-empirical-research, covering claude.md — r research pipeline for economists (template), core principles, folder structure, commands and one-time: install the r stack and snapshot renv.