Hook
Runs before the agent uses a tool for Edit, Write and Bash tool calls, executing citation_guard.sh, remote_inplace_edit_guard.sh, outbound_artifact_reminder.sh, long_job_launch_inject.sh and destructive_path_guard.sh (5 commands). From fcakyon/phd-skills.
Hook
Runs after a tool call finishes for Edit, Edit, Write and Bash tool calls, executing latex_check.sh, jargon_scrub.sh, timezone_scrub.sh and visual_check.sh (4 commands). From fcakyon/phd-skills.
Hook
Runs when the agent sends a notification, executing notify.sh. From fcakyon/phd-skills.
Hook
Runs before the context is compacted, executing save_state.sh. From fcakyon/phd-skills.
Skill Claude CodeCodex
Same-epoch comparison of training runs across wandb, neptune, tensorboard, or mlflow. Aligns runs at the student's current step (never current-vs-final-of-baseline) and separates proxy metrics from downstream targets. Use when the user asks to compare runs, check if a run is improving, track lag against a baseline…
Skill Claude CodeCodex
Use when the user wants to analyze dataset bias, create stratified samples, evaluate fairness, or plan dataset collection. Triggers on phrases like "dataset bias", "stratified sample", "class imbalance", "data distribution", "fairness analysis", or "ethical review".
Skill Claude CodeCodex
Evidence-before-action diagnosis of failing ML experiments. Probes the system before guessing causes, process list, dmesg, GPU stats, log scrollback, checkpoint state, then states a hypothesis as a hypothesis and runs a smoke before claiming a root cause. Use when the user asks why a run is failing, diverging, OOMing…
Skill Claude CodeCodex
Use when the user wants to design experiments, plan ablation studies, structure baselines, or create incremental evaluation strategies. Triggers on phrases like "design ablation", "plan experiment", "what experiments should I run", "baseline comparison", or "experiment matrix".
Skill Claude CodeCodex
Use when the user wants to set up or troubleshoot a LaTeX environment, choose between biber and bibtex, install packages for a specific venue template, or configure compilation. Triggers on phrases like "setup latex", "biber vs bibtex", "latex compilation error", "install latex packages", "venue template", or "texlive…
Skill Claude CodeCodex
Pre-flight checklist for long-running ML training jobs covering config diff, run naming, path verification, monitoring setup, and restart-cleanup. Use when the user asks to launch, kick off, start, restart, or kill a training run, or mentions launching a multi-hour or multi-day GPU job (python train, accelerate…
Skill Claude CodeCodex
Use when the user wants to find related work, survey a research area, identify literature gaps, or discover open-source implementations. Triggers on phrases like "find papers on", "related work", "literature review", "what papers exist", "open source implementation", or "papers with code".
Skill Claude CodeCodex
Use when the user wants to verify paper claims against code or data, audit numerical accuracy, check formula-code alignment, or validate citation accuracy. Triggers on phrases like "verify claims", "check numbers", "do the numbers match", "formula vs code", "audit the paper", or "cross-check results".
Skill Claude CodeCodex
Use when the user wants to write, structure, or revise academic paper sections, improve notation consistency, or refine figures and tables. Triggers on phrases like "write the abstract", "structure the methods", "improve this section", "notation consistency", "figure refinement", or "paper structure".
Skill Claude CodeCodex
End-to-end paper reproduction from arxiv URL through smoke runs to replication experiments. Handles missing or partial official code, missing training scripts, missing hyperparameters, and private datasets via similar-public-dataset substitution. Use when the user asks to reproduce, implement, replicate, or re-run a…
Skill Claude CodeCodex
Use when the user wants to prepare code for open-source release, create reproducible research artifacts, or structure a repository for publication. Triggers on phrases like "publish code", "open source release", "reproducibility", "research repository", "code release", or "prepare for publication".
Skill Claude CodeCodex
Use when the user wants to anticipate reviewer questions, select the strongest ablations to present, prepare rebuttals, or identify paper weaknesses before submission. Triggers on phrases like "reviewer questions", "anticipate reviewers", "rebuttal", "paper weaknesses", "defend the paper", or "strengthen the paper".
MCP server Claude CodeCodexCursor +2
MCP (Model Context Protocol) server support for trackio experiment tracking. Runs locally from the trackio-mcp Python package.