Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add fcakyon/phd-skills --skill paper-verificationgit clone --depth 1 https://github.com/fcakyon/phd-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/fcakyon/phd-skills/paper-verification)<a href="https://agentmods.dev/skills/fcakyon/phd-skills/paper-verification"><img src="https://agentmods.dev/badge/skills/fcakyon/phd-skills/paper-verification/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/fcakyon/phd-skills/paper-verification"><img src="https://agentmods.dev/badge/skills/fcakyon/phd-skills/paper-verification.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00067 | $0.01136 |
| Opus 5.5 | $0.00027 | $0.00454 |
| Sonnet 5.5 | $0.00013 | $0.00227 |
| Haiku 4.5 | $0.00007 | $0.00114 |
Grade A, and why
paper-verification scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 14d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 125 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Paper Verification Methodology
You are helping a researcher verify that their paper accurately reflects their code and experimental results. This is the most critical quality control step in academic writing.
Verification Dimensions
1. Numerical Accuracy Audit
For every number in the paper (dataset sizes, metric values, percentages, counts):
- Extract the number and its context from the .tex file
- Trace it to its source: code output, result file, log, or tracking system
- Verify the value matches exactly (watch for rounding, percentage vs decimal)
- Flag any number that cannot be traced to a source
Template:
| Paper claim | Location (.tex) | Source file/code | Source value | Match? |
|-------------|-----------------|-----------------|-------------|--------|
| "13,999 frames" | abstract L3 | len(glob(labels/*.json)) | ? | ? |
| "4.2% improvement" | Table 2 | eval_results.json | ? | ? |
Common numerical errors:
- Rounding inconsistencies (3.14 in text, 3.1415 in table)
- Stale numbers from earlier experiments not updated after re-runs
- Percentage vs absolute confusion
- Off-by-one in dataset counts (headers counted, or not)
2. Terminology Consistency Audit
- Extract all defined terms from the methods section
- Search for each term across ALL sections
- Flag any inconsistent usage:
- Same concept, different names (e.g., "tag head" vs "classification head")
- Same name, different meanings across sections
- Defined but never used, or used but never defined
3. Code-Paper Alignment
For each method described in the paper:
- Find the corresponding code (function, class, module)
- Compare the paper's description with the actual implementation
- Check specifically:
- Algorithm steps match code flow
- Hyperparameters in text match config/code defaults
- Architecture descriptions match model code
- Loss functions in equations match loss code
- Training procedures match training scripts
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 14d ago Changed · +3 lines 5844e4ad93a4
- 1mo ago First seen · 122 lines · 67 tokens per session scan A fdd033ff8a78
paper-verification is a skill published in the GitHub repository fcakyon/phd-skills (433 stars, last pushed 14d ago), licensed MIT. It adds 67 tokens to every session and 1,136 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
lc_arxiv
A tool for searching arXiv, a public repository of research papers, mainly in science and technology.
dfam-check
Measure mesh files against Design for Additive Manufacturing (DfAM) rules and report printability findings per process (FDM, SLS, SLA/DLP, metal PBF, MJF). Use when the user asks whether a part is printable, wants overhang/wall-thickness/support analysis of an .stl, .obj, .ply, or .3mf mesh, wants a build-orientation…
tooluniverse-variant-analysis
VCF and variant analysis — parsing, annotation, classification (synonymous, missense, frameshift, stopgained), VAF filtering, coding vs non-coding categorization, multi-condition variant comparison, variant-notation conversion (SPDI/HGVS/VCF/rsID interconversion, ALFA per-ancestry allele frequencies), European…
tooluniverse-phylogenetics
Phylogenetic analysis — de novo multiple sequence alignment (Clustal Omega/MUSCLE/MAFFT via EBImsaalign) and neighbour-joining/UPGMA tree building (EBIbuildphylogenetictree) from your own sequences, plus tree analysis, treeness, saturation (PhyKIT), parsimony-informative sites, alignment gap analysis, DVMC…
tooluniverse-systems-biology
Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway enrichment, protein-pathway relationships, network reasoning. Use for pathway analysis on a gene list, multi-source pathway concordance, and systems-level…
tooluniverse-cancer-variant-interpretation
Clinical interpretation of somatic cancer mutations for precision oncology. Transforms a gene + variant + cancer-type input into an actionable report: clinical evidence tier (CIViC, OncoKB), therapeutic options (FDA-approved + investigational), resistance mechanisms, prognosis, and matching clinical trials. Use for…