Skill Claude CodeCodex
Upgrade an AWS Glue ETL job from Glue version 0.9 or 1.0 to Glue 4.0. Runs the job against Glue 4.0, diagnoses failures against a known breaking-change catalogue, patches the job script and configuration, and iterates until the job succeeds or the fix attempt limit is exhausted. Jobs using the AWS Encryption SDK…
Skill Claude CodeCodex
Migrate a legacy AWS Glue development endpoint to a Glue interactive session, following the official AWS migration checklist. Inventories the dev endpoint config, maps it to an equivalent interactive session (runtime role, Glue version, workers, VPC connection, idle timeout), provisions the session, validates by…
aws-samples/serverless-samples
Skill Claude CodeCodex
Transform OpenAPI specifications (Swagger 2.0, OpenAPI 3.0, 3.1) into Amazon API Gateway-compatible REST APIs. Orchestrates transform, validate, optionally deploy via AWS SAM, E2E test against live endpoints, and report unsupported features. Use when converting OpenAPI to API Gateway, importing a Swagger/OpenAPI spec…
aws-samples/serverless-samples
Settings file Claude Code
Agent settings declaring 5 allowed tools.
aws-samples/serverless-samples
Skill Claude CodeCodex
Deploys the SAM application to AWS. Runs build, validation, and deploy steps in sequence.
aws-samples/serverless-samples
Skill Claude CodeCodex
Checks code against organizational standards for naming conventions, documentation, error handling, and code quality.
aws-samples/serverless-samples
Skill Claude CodeCodex
Review and apply updates from the central claude-hub fragment to the current project.
aws-samples/serverless-samples
Skill Claude CodeCodex
Performs a security review of code changes, checking for common vulnerabilities and security issues.
aws-samples/serverless-samples
Skill Claude CodeCodex
Reviews API changes for consistency with the Acme API style guide, REST conventions, and backward compatibility.
aws-samples/serverless-samples
Plugin Claude Code
Centralized org configuration sync for Claude Code.
aws-samples/serverless-samples
Hook
Runs when a session starts, executing sync.sh via bash. From aws-samples/serverless-samples.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Plugin Claude Code
Plugin marketplace listing 1 plugin: hcls-agents.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate…
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
MCP server Claude CodeCodexCursor +2
MCP server "agentcore-docs" as configured in aws-samples/amazon-bedrock-agents-healthcare-lifesciences. Runs locally from the awslabs.amazon-bedrock-agentcore-mcp-server@latest Python package.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Plugin Claude Code
Healthcare and Life Sciences domain skills and MCP tools — genomics, drug discovery, clinical trials, biomarker analysis, medical terminology, and more. Use with the AWS Agent Toolkit for full agent build-and-deploy workflows.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when a researcher needs to query biomedical databases for biomarker discovery, build target profiles from UniProt/Open Targets/STRING, rank biomarker candidates by evidence strength, or generate SQL queries against clinical genomic databases.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when orchestrating a multi-agent biomarker discovery workflow that requires coordinating database queries, pathway analysis, literature review, statistical modeling, and clinical evidence synthesis to produce ranked biomarker panels.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when a researcher needs to analyze biological pathways for biomarker discovery, map disease mechanisms to druggable targets using Reactome/KEGG, identify pathway enrichment from gene sets, or understand mechanism-of-action for candidate biomarkers.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when drafting clinical trial protocol sections (objectives, background, study design) grounded in ICH guidelines (E6, E8, E9) and FDA regulations (21 CFR Part 312). Generates IRB-ready protocol documents from grant documents or study synopses.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when interpreting genomic variants from VCF files, performing clinical variant classification using ClinVar/VEP annotations, analyzing allele frequencies against population data (1000 Genomes), or generating clinical reports for genetic counseling.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with domain-specific capabilities. Also use when someone asks about agent architecture, tool design, or system prompt patterns for clinical, genomics, or drug…
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when a developer wants to deploy an HCLS agent to Amazon Bedrock AgentCore, configure Gateway tools as MCP endpoints, set up authentication with Cognito, configure memory, or register an agent in the AgentCore Registry. Also use for deployment troubleshooting.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex
Use when a developer asks how to get started building healthcare or life sciences agents, wants to understand the HCLS Agents Toolkit, or asks what's available in this repository. Also use when someone asks about genomics, drug discovery, clinical trials, or biomarker agents on AWS.