| # | Mod | Type | Stars | Scan | Tokens | Rating |
|---|---|---|---|---|---|---|
| 1 | pos-tagging-fixesspencermountain/compromiseDiagnose and fix part-of-speech tagging in the compromise source repository. Choose between lexical data, ambiguity clues, indexed neighbour rules, preTagger logic, and postTagger patterns with attention to execution order, side effects, runtime, and bundle size. Use for internal tagging changes, not ordinary… | Skill | 12k | A | 72 | — |
| 2 | meta-paper-writeopensquilla/opensquillaUse this meta-skill instead of answering directly when the current user asks to draft or produce a new academic/research paper or LaTeX manuscript. It uses multi-skill orchestration for manuscript workflows that need source search, citation planning, experiment or figure/table placeholders, drafting, length checks… | Skill | 7.1k | A | 125 | — |
| 3 | remote-compute-sshaipoch/open-scienceEvaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote commands and asynchronous jobs with automatic harvest and analysis. | Skill | 5.5k | A | 53 | — |
| 4 | autoresearchOrchestra-Research/AI-Research-SKILLsOrchestrates end-to-end autonomous AI research projects using a two-loop architecture. The inner loop runs rapid experiment iterations with clear optimization targets. The outer loop synthesizes results, identifies patterns, and steers research direction. Routes to domain-specific skills for execution, supports… | Skill | 14k | A | 98 | — |
| 5 | clinical-reportssynthetic-sciences/openscienceWrite comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation… | Skill | 4.3k | A | 71 | — |
| 6 | pysrastroautomata/PySRUse when fitting equations to data with PySR or SymbolicRegression.jl, when a user wants an interpretable formula, symbolic model, scaling law, or empirical relation discovered from numeric data, or when debugging a PySR search that is slow, stuck, or giving poor equations. | Skill | 4.2k | A | 61 | — |
| 7 | scientific-slidesforyourhealth111-pixel/Vibe-SkillsBuild slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and… | Skill | 3.8k | A | 65 | — |
| 8 | funasr-mcpmodelscope/FunASRMCP server "funasr-mcp" as configured in modelscope/FunASR. Runs in Docker (ghcr.io/modelscope/funasr-mcp:0.1.2). | MCP server | 21k | A | — | — |
| 9 | peer-reviewxintaofei/codegStructured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating… | Skill | 4.2k | A | 71 | — |
| 10 | clinvar-databasegoogle-deepmind/science-skillsUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" benchmark controls for human genomic variants. | Skill | 3.4k | A | 45 | — |
| 11 | rdkitbenchflow-ai/skillsbenchCheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom… | Skill | 1.9k | A | 80 | — |
| 12 | review-paperpedrohcgs/claude-code-my-workflowComprehensive manuscript review with three modes: single-pass (default), --adversarial critic-fixer loop, and --peer [journal] simulated peer-review pipeline (editor + 2 dispositioned referees + editorial decision, calibrated to a target journal). R&R continuation via --peer --r2/--r3; hostile-editor stress test via… | Skill | 1.7k | A | 0 | — |
| 13 | openmed-skillsmaziyarpanahi/openmedDe-identify PHI, run clinical NER, export FHIR, evaluate with leakage gates, and the healthcare workflows around them. | Plugin | 5.8k | A | — | — |
| 14 | data-science-visualizationVisActor/VChartA workflow for choosing and producing data visualisations from supplied data. It focuses on selecting a chart that answers the stated question, preserving units and limits, and delivering a viewable HTML file with the chart. | Skill | 1.9k | A | 66 | — |
| 15 | latex-postersbeita6969/ScienceClawCreate professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication. | Skill | 1.0k | A | 60 | — |
| 16 | anti-defensive-writing-enAdkid-Zephyr/anti-defensive-writing-SkillStops defensive writing across the entire paper lifecycle — writing, revising, cutting, and organizing experiments. Treats the paper as a press conference, not a project summary, lab log, or self-audit: identify the single most publishable strength of the work and build the most favorable, complete, and persuasive… | Skill | 5.3k | A | 138 | — |
| 17 | spectreArcadia-1/virtuoso-bridge-liteRun Cadence Spectre simulations remotely via virtuoso-bridge: upload netlists, execute, parse PSF results. TRIGGER when the user wants to run a SPICE/Spectre simulation from a netlist file, do transient/AC/PSS/pnoise analysis outside Virtuoso GUI, parse PSF waveform data, run multiple simulations in parallel across… | Skill | 1.0k | A | 135 | — |
| 18 | quantum-qiskitaiming-lab/AutoResearchClawReference qiskit 2.x patterns for variational quantum machine learning. Covers data-encoding feature maps, variational quantum classifier (VQC) training, variational quantum eigensolver (VQE) for chemistry, matrix-product-state circuits, and noise model integration. Use when writing Python code that imports qiskit… | Skill | 15k | A | 102 | — |
| 19 | fenics-femCai-aa/CAE-Agent-HubUse this Skill to solve PDEs with the finite element method using FEniCS/dolfinx: weak form formulation, mesh generation with gmsh, Poisson/elasticity problems, boundary conditions, and paraview export. | Skill | 1.3k | A | 53 | — |
| 20 | totalsegmentatorwasserth/TotalSegmentatorUse for requests involving medical-image files or image-based analysis, especially CT or MR, including anatomy or pathology detection, segmentation, mask creation, modality detection, contrast-phase estimation, quantitative measurements, and body-statistics estimation. Check TotalSegmentator capabilities before using… | Skill | 3.1k | A | 67 | — |
| 21 | eval-validity-reviewUKGovernmentBEIS/inspect_evalsReview a single evaluation's validity — whether its claims hold up, whether its name is accurate, whether samples can be both succeeded and failed at, and whether scoring measures ground truth. Use when user asks to check validity of an eval, or as part of the Master Checklist workflow. Do NOT use for code quality or… | Skill | 733 | A | 83 | — |
| 22 | paper2poster-posterPaper2Poster/Paper2PosterUse when the user wants to turn an academic paper into a conference poster, poster outline, poster copy deck, poster layout brief, poster.yaml style draft, or Paper2Poster-ready generation package. Trigger for paper-to-poster requests involving PDF papers, arXiv links, manuscripts, PPTX posters, conference… | Skill | 4.0k | A | 80 | — |
| 23 | scientific-writingBoom5426/Nature-Paper-SkillsUse when writing or revising scientific manuscripts, abstracts, figures, or references for journal submission and you need full-paragraph prose, scientific structure, citation-style guidance, or reporting-guideline support. | Skill | 657 | A | 43 | — |
| 24 | paper-searchopenags/paper-search-mcpSearch, download, and read academic papers from 20+ sources (arXiv, PubMed, Semantic Scholar, CrossRef, etc). Use when the user asks to find papers, search for research, look up academic literature, download a paper PDF, or extract text from a paper. | Skill | 3.0k | A | 62 | — |
| 25 | bio-ortholog-inferencePKU-YuanGroup/OpenAI4SPull pre-computed ortholog calls from public databases (OrthoDB, Ensembl Compara, OMA browser, eggNOG, PANTHER, KEGG Orthology, HomoloGene) via their REST APIs. Use when orthologs are already curated upstream, when the question is "what is the X ortholog of Y" rather than "how to infer orthology de novo", when… | Skill | 662 | A | 141 | — |
| 26 | Developmental Gene Panel Design Workflowaristoteleo/PantheonOSPanel design for DEVELOPING / dynamic systems (embryonic organs, differentiation, regeneration). The target experiment is usually a LATE / terminal stage, but the biology is a trajectory: terminal cell types are end-products of earlier lineage programs. A panel built from the target stage alone resolves terminal… | Skill | 493 | A | 129 | — |
| 27 | add-benchmarkallenai/vla-evaluation-harnessAdd or improve a simulation benchmark in vla-eval, including evaluation protocol, assets, adapter lifecycle, and runtime validation. | Skill | 675 | A | 29 | — |
| 28 | cnsplotsfaridrashidi/cnsplotsCreate, revise, and troubleshoot publication-ready scientific plots in Python with cnsplots, including distribution, regression, heatmap, genomics, survival, set, flow, and multi-panel figures. Use when a user asks for cnsplots code, Cell/Nature/Science-style visualization, precise physical figure dimensions… | Skill | 724 | A | 79 | — |
| 29 | explain-paperraphaelmansuy/edgequakeUse EdgeQuake MCP tools as evidence — never invent document lists. | Skill | 2.3k | A | 0 | — |
| 30 | review-paperclaesbackman/AI-research-feedbackRun an 8-agent pre-submission referee report for an academic paper targeting a specified journal. | Skill | 528 | A | 0 | — |
| 31 | clinical-trial-protocol-skillAgent-Threat-Rule/agent-threat-rulesGenerate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for… | Skill | 425 | A | 70 | — |
| 32 | nvidia-cuopt-skillsNVIDIA/cuoptAgent skills for NVIDIA cuOpt: routing (VRP, TSP, PDP), LP/MILP/QP, installation (Python/C/developer), and REST server. Use when building or solving optimization with cuOpt. | Plugin | 1.1k | A | — | — |
| 33 | ideationOpenRaiser/NanoResearchYou are the Ideation Agent for NanoResearch. Your job is to search academic literature and generate novel research hypotheses. | Command | 1.3k | A | 0 | — |
| 34 | paper-graphEvoScientist/EvoSkillsMap the genealogical lineage and historical progression of a research field. Visualize how earlier technical challenges led to later approaches and improvements, producing a Markdown report with embedded Mermaid diagrams. Trigger when the user asks for a topic's developmental trajectory, a model's family tree… | Skill | 486 | A | 131 | — |
| 35 | nvalchemi-distillationNVIDIA/nvalchemi-toolkitHow to distill a large teacher MLIP into a small student with DistillationStrategy — teacher signals and offline dataset labeling, the teacher loss targets, the on-policy segment loop (propagator, replay buffer, mixed loader), checkpoints and restart, and accuracy/stability evaluation with acceptance thresholds. Use… | Skill | 204 | A | 109 | — |
| 36 | formulate-hypothesesyogsoth-ai/de-anthropocentric-research-engineGenerate testable hypotheses from theory, empirical regularity, anomaly, or explicit explanatory competition. Deductive, inductive, abductive, and competing-hypothesis generation are modes; discriminating predictions and comparison are activated in competing mode. | Skill | 510 | A | 54 | — |
| 37 | statspai-analysisbrycewang-stanford/StatsPAIRun a full empirical / causal analysis in Python with StatsPAI (import statspai as sp) — applied-economics style (DID / RD / IV / synthetic control / DML / matching with estimating equation, identifying assumption, Table 1, main table, event-study figure, robustness gauntlet, Word / Excel / LaTeX export), epidemiology… | Skill | 367 | A | 271 | — |
| 38 | marimo-creatorkoaning/wigglystuffAn agent that excells at creating marimo notebooks. | Command | 455 | A | 16 | — |
| 39 | ci-mockup-figureyzhao062/anywhere-agentsCreate paper and proposal figures guided by confirmed visual preferences and efficient use of page space. HTML mockups for systems, dashboards, and timelines; TikZ or skia-canvas for abstract diagrams with arrow routing. Covers tool selection, design, capture, and LaTeX insertion. | Skill | 261 | A | 63 | — |
| 40 | mathodology-evidence-searchsweetcornna/mathodologyUse when finding literature, datasets, domain facts, citation details or licensed figure references. | Skill | 320 | A | 24 | — |
| 41 | mirobodythetahealth/mirobodyStandardize raw health data into LOINC/UCUM/ICPC-3 coded rows and read lab reports against an offline resolver; self-host Mirobody and connect an agent over MCP. | Plugin | 1.4k | A | — | — |
| 42 | deep-science-writerCYC2002tommy/Deep-Research-AgentScientific literature pipeline on Scopus, Exa, OpenAlex, Semantic Scholar and AnySearch: map a field (themes, foundational papers, research groups, gaps), find verbatim gap quotes and draft a positioning narrative for an Introduction or proposal, build a course reading list from a syllabus, or run the full manuscript… | Skill | 369 | A | 113 | — |
| 43 | solve engineering taskequinor/neqsimSolves process-engineering problems using the NeqSim Java API with proportional depth: quick answer-first calculations, notebook-backed studies, or full reports. Delivers auditable task folders with validation evidence, runner-executed notebooks/scripts, and reports when needed. When NeqSim lacks a needed capability… | Agent | 163 | A | 73 | — |
| 44 | arxiv-mcp-serverblazickjp/arxiv-mcp-serverSearch, download, read, and analyze arXiv papers through MCP. | Plugin | 3.3k | A | — | — |
| 45 | comsol-simsvd-ai-lab/sim-cliUse when the user asks Codex, Claude Code, ChatGPT-style coding agents, or another AI agent to build, inspect, run, debug, or revise COMSOL Multiphysics / COMSOL Desktop models. Choose the simplest real COMSOL control path for the task: saved .mph inspection, local COMSOL documentation, direct COMSOL executables… | Skill | 247 | A | 134 | — |
| 46 | inspirerealZillionX/InspireSkillUse for the Inspire compute platform through the inspire CLI: INSPIRE.md asset upkeep, workspace/project/resource/path selection, Notebook, GPU Job, HPC, Ray, Serving, TensorBoard, Image, Model Registry, observation, cleanup, and Inspire CLI Browser API maintenance. Use CLI Help for syntax and load only the focused… | Skill | 553 | A | 68 | — |
| 47 | paper-criticflonat/flonat-researchAdversarial auditor for LaTeX papers. Read-only with respect to project files (paper, bib, code, data); writes its own report at reviews/ /paper-critic/ .md plus a findings.json sidecar. Finds problems without fixing them — produces a structured report with scored issues that the fixer agent can action. Assumes the… | Agent | 149 | A | 625 | — |
| 48 | omnisim-world-builderomnilink-tech/omnisimBuild, inspect, run, and debug OmniSim robotics worlds through the first-party MCP tools. Use for requests involving OmniSim scenes, robots, cameras, contacts, physics checks, or screenshots; do not use for unrelated simulators. | Skill | 191 | A | 53 | — |
| 49 | academic-investigationyadnuses/Academic-DetectiveA structured system for investigating researchers, their qualifications, publications, affiliations, relationships, and possible academic misconduct. | Skill | 316 | A | 98 | — |
| 50 | biomcpgenomoncology/biomcpBiomedical search and evidence retrieval MCP server. | Plugin | 674 | A | — | — |
| 51 | audit-scientific-figureicebird1998/scientific-illustratorReview and score an existing scientific illustration in visible draw.io, Microsoft PowerPoint, or WPS Presentation without hiding defects through flattening. Use for reference-fidelity checks, layout cleanup, connector review, text-fit checks, deep editability and raster-atomicity inspection, local-region gates, or… | Skill | 981 | A | 80 | — |
| 52 | polish-sci-figureszhoy0409-debug/polish-sci-figuresA final review and preparation workflow for scientific figures, including charts, image panels, manuscripts, slides, and posters. | Skill | 79 | A | 107 | — |
| 53 | alterlab-openalexAlterLab-IEU/AlterLab-Academic-SkillsQuery and analyze scholarly literature using the OpenAlex API across 300M+ works, retrieving papers, authors, institutions, citations, and open access status. Use when searching academic papers, tracking citations, finding works by author or institution, analyzing research trends, discovering open access publications… | Skill | 85 | A | 76 | — |
| 54 | nature-figureResearAI/DeepScientistSubmission-grade Nature/high-impact journal figure workflow for Python or R. Use whenever the user asks to create, revise, audit, or polish manuscript figures, multi-panel scientific plots, or journal-ready SVG/PDF/TIFF outputs, especially for Nature-family or other high-impact journals. Before plotting, define the… | Skill | 3.4k | A | 142 | — |
| 55 | ai-research-reproductionlllllllama/RigorPilot-SkillsRigor Reproduce compatible skill slug for README-first deep learning repository reproduction. Use when the user wants an end-to-end, minimal-trustworthy flow that reads the repository first, selects the smallest documented inference or evaluation target, coordinates intake, setup, trusted execution, optional trusted… | Skill | 486 | A | 136 | — |
| 56 | paperfitOpenRaiser/PaperFitPaperFit project rule for LaTeX visual typesetting optimization. | Cursor rule | 337 | A | 0 | — |
| 57 | sciatlas-idea-evaluatezjunlp/SciAtlasUse only the current SciAtlas automated review workflow (reviewpipeline) to take a novice user from zero setup to a final automated review of a research idea or paper, including setup, registration guidance, workflow configuration, retrieval, artifact reading, and synthesis. Trigger when the user asks whether an idea… | Skill | 168 | A | 96 | — |
| 58 | phidownESA-PhiLab/phidownSearch, filter, download, and analyze Copernicus Data Space products with the phidown project. Use this skill when a user asks to find Sentinel products, query by AOI/date/product type, run burst coverage analysis, download by product name or S3 path, configure credentials (.s5cfg), troubleshoot phidown CLI/Python… | Skill | 105 | A | 90 | — |
| 59 | notebook-clijupyter-ai-contrib/nb-cliUse the nb CLI for all Jupyter notebook (.ipynb) operations, including reading, inspecting, creating, editing cells, deleting cells, clearing outputs, searching, executing, and working with connected JupyterLab sessions or remote kernel gateways. Required when an agent needs deterministic notebook manipulation without… | Skill | 97 | A | 73 | — |
| 60 | medsci-modelingAperivue/medsci-skillsClinical AI model research engineering: choose a paper-grounded architecture, scaffold a reproducible PyTorch training repo, validate the model's split and validation design, document it (Model Card / Datasheet), and evaluate models or LLMs/MLLMs on clinical tasks. Integrates MONAI / nnU-Net, never replaces them. | Plugin | 367 | A | — | — |
| 61 | use-agent-skillslearningmatter-mit/AtomisticSkillsDiscover available AtomisticSkills by scanning skills/ frontmatter. Use this to find skills relevant to a research task. | Cursor rule | 186 | A | 236 | — |
| 62 | aej-applied-economics-skillsbrycewang-stanford/Awesome-Journal-SkillsAgent skill stack for manuscripts targeted at the American Economic Journal: Applied Economics (AEJ: Applied) — the American Economic Association's quarterly journal for empirical applied microeconomics with credible causal identification, spanning labor, development, health, education, public, urban, environmental… | Plugin | 1.4k | A | — | — |
| 63 | fig-drawAzhi-ss/academic-figure-skillsPlan, generate, inspect, and refine academic figures from repositories, papers, draft notes, paper URLs, PDFs, or reference images. Design evidence-grounded academic figures and construct, diagnose, or revise scientific image prompts, including semantic palettes, reference-led styles, prompt engineering… | Skill | 183 | A | 85 | — |
| 64 | data-checkFrontisAI/NatureBenchAcquire and verify data for CNS papers that passed paper-filter. Clones repositories, downloads and organizes datasets per evaluation setting, performs Level 4 deep verification (acquisition integrity, initial state, separability, consistency, per-setting completeness), creates an organized data environment. Updates… | Skill | 137 | A | 72 | — |
| 65 | section-11CrankAddict/section-11Evidence-based endurance coaching protocol. Use when analyzing training data, reviewing sessions, generating pre/post-workout or requested weather reports, planning workouts, answering training questions, or giving endurance coaching advice. Always read or fetch athlete JSON data before responding to any training… | Skill | 164 | A | 56 | — |
| 66 | geophysical-inversionSteadfastAsArt/geoscience-skillsGeophysical data inversion workflow from data loading through mesh creation, forward modelling, inversion, and result visualization. Use when inverting ERT, magnetics, gravity, or EM survey data. | Skill | 77 | A | 44 | — |
| 67 | genomicsopenscientist-io/openscientistGenomics and transcriptomics analysis strategies. | Skill | 63 | A | 10 | — |
| 68 | awesome-gaussian-skillsjaccen/Awesome-Gaussian-SkillsA research toolkit and router for 3D Gaussian Splatting, a method for representing and rendering 3D scenes with many small Gaussian shapes. It links research papers, methods, specialist tasks, and supporting references. | Skill | 178 | A | 212 | — |
| 69 | paperbananallmsresearch/paperbananaAgentic framework for automated academic illustration generation. Runs locally from the paperbanana Python package. | MCP server | 2.5k | A | — | — |
| 70 | good-questionRimagination/good-questionUse when a researcher is choosing, framing, refining, or stress-testing a research question, hypothesis, thesis topic, project idea, grant direction, paper angle, or stalled research direction. | Skill | 314 | A | 40 | — |
| 71 | mathmodel-skillhandsomeZR-netizen/mathmodel-skillAn end-to-end workflow for mathematical-modeling competitions, including CUMCM, MCM/ICM, and the Electrical Cup. It guides teams from choosing a problem through modeling, solving, checking, writing, rule compliance, and final review. | Skill | 296 | A | 127 | — |
| 72 | by-campaign-manager001TMF/blatant-whyPlan, execute, monitor, and assess protein/antibody design campaigns. This skill governs how to size a campaign, track run state, coordinate multi-run efforts, estimate cost and time on each compute target (local GPU, HPC, Tamarind), monitor progress, and evaluate campaign health. | Skill | 119 | A | 4 | — |
| 73 | synplanner-usageLaboratoire-de-Chemoinformatique/SynPlannerPlan retrosynthetic routes, curate reaction data, extract reaction rules, train retrosynthesis policy and value networks, and analyse synthetic routes with the installed SynPlanner package. SynPlanner is built on chython (chython-synplan, formerly CGRtools), not RDKit. Use when the user imports synplan., asks for a… | Skill | 60 | A | 182 | — |
| 74 | mitiq-error-mitigationxi-zhao/OpenQuantumA local experiment runner for testing four ways to reduce errors in sampled quantum circuits: zero-noise extrapolation, readout correction, probabilistic error cancellation, and Clifford data regression. It compares noisy and mitigated results under the same sampling budget. | Skill | 71 | A | 48 | — |
| 75 | open-meteo-advancedcmer81/open-meteo-mcpUse when the user wants a specific weather model, needs ensemble uncertainty ranges, requests seasonal outlooks, or asks for long-term climate projections. | Skill | 73 | A | 35 | — |
| 76 | qdashoqtopus-team/qdashQuery a running QDash instance from pi via the pi-qdash extension and @oqtopus-team/qdash-client. Use when inspecting chips, metrics, task results, tasks, projects, files, flows, executions, forum posts, provenance, or QDash profile/configuration. | Skill | 54 | A | 61 | — |
| 77 | researcherkrzysztofdudek/ResearcherSkillAutonomous experimentation skill — your AI coding agent designs experiments, tests hypotheses, discards failures, keeps wins. Runs overnight while you sleep. | Plugin | 267 | A | — | — |
| 78 | tangermemejmschrei/tangermemeUse for any task involving the tangermeme library — post-training analysis of genomic sequence-to-function (S2F) deep learning models. Triggers on predictions, DeepLIFT/SHAP attributions, saliency, PISA, dependency maps, marginalization/ablation/spacing of motifs, saturation mutagenesis (ISM), variant effect scoring… | Skill | 331 | A | 147 | — |
| 79 | cherimoyajmschrei/cherimoyaTrain, evaluate, and use Cherimoya sequence-to-function genomic models with the cherimoya command-line tools or Python API. Use when a user wants to run the end-to-end pipeline, use a trained model to do downstream tasks, or troubleshoot a run. Designed for users who may be new to Cherimoya or to sequence modeling… | Skill | 71 | A | 106 | — |
| 80 | sc-cell-annotationTianGzlab/OmicsClawLoad when assigning cell-type labels to a clustered scRNA AnnData via marker dictionaries, CellTypist, PopV, KNNPredict, SingleR, scmap, SCSA, or a manual cluster-to-label map. Skip when ranking marker genes per cluster (use sc-markers); condition-vs-control DE (use sc-de). | Skill | 161 | A | 73 | — |
| 81 | healthchainhealthchainai/HealthChainBuild healthcare AI services with HealthChain: FHIR gateways, validated FHIR resources, and typed agent tools. | Plugin | 231 | A | — | — |
| 82 | staad-loadingBentleySystems/openstaad-mcpUse when defining load cases, applying self-weight, nodal loads, member loads (uniform, concentrated, trapezoidal, linear varying), plate pressure, floor loads, temperature loads, wind loads, seismic loads, load combinations, load envelopes, load lists, reference loads, notional loads, repeat loads, response spectrum… | Skill | 56 | A | 898 | — |
| 83 | molecular-dynamicsK-Dense-AI/drug-discovery-agent-skillsRun and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein and protein-ligand systems with PDBFixer, choose force fields and water models (AMBER14, CHARMM36m, ff19SB, GAFF2, TIP3P), solvate and add ions, run energy minimization, NVT/NPT equilibration and production MD on GPU, then… | Skill | 54 | A | 180 | — |
| 84 | jacobianmorluto/jacobianExecutable mathematics and independent verification for AI agents. Runs locally from the jacobian npm package. | MCP server | 355 | A | — | — |
| 85 | splicecraftBinomica-Labs/SpliceCraftDrive SpliceCraft — a terminal plasmid-map viewer, sequence editor and molecular-cloning workbench — through its localhost agent API. Teaches Claude to connect (including attaching read-only to a session you already have open), the canvas-vs-library model, the 0-based forward-strand coordinate convention, the… | Plugin | 252 | A | — | — |
| 86 | genomiexon-research/genomiUse this skill for genetics, genome source, variant, gene, phenotype, disease, screen, pharmacogenomics, and Genomi install/setup maintenance questions. | Skill | 490 | A | 34 | — |
| 87 | paperpushpachterlab/paperpushSkills for paperpush: autofill a submission from the manuscript, validate it against the venue's guidelines, submit it, debug a stalled portal run, and add venues. | Plugin | 210 | A | — | — |
| 88 | omnisciOmni-Scientist/OmniScientistRun OmniScientist end to end in the OmniScientist CLI using DeepSeek V4 Flash. Turn raw research data (images, signals, audio, video, 3-D, tables, or graphs) and an open direction into perceived evidence, a falsifiable hypothesis, recorded analysis, real citations, a gated candidate paper, PDF, and Overleaf bundle.… | Skill | 174 | A | 145 | — |
| 89 | mimic-apsiii-24h-rawhannesill/m4The following block is the public reference SQL used to construct the ground truth for this task. It is provided verbatim, without procedural prose, to test whether matched task-relevant content alone explains the WITH-SKILL gain. | Skill | 50 | A | 0 | — |
| 90 | search-math-resultsfrenzymath/DanusFind program-conditioned math results, constructions, examples, counterexamples, analogies, and background references. Use when the current active program needs repair, mutation, analogy, a program shift, or carefully gated obstruction search. | Skill | 502 | A | 48 | — |
| 91 | pubmed-mcp-servercyanheads/pubmed-mcp-serverSearch PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms. | Plugin | 167 | A | — | — |
| 92 | chemistry-analysisleonardodalinky/SciDERCheminformatics and computational chemistry — SMILES/InChI parsing, molecular property prediction, spectroscopy interpretation, DFT workflow, materials characterization (XRD, SAXS), and key chemistry databases. Use when analyzing chemical or materials data. | Skill | 88 | A | 52 | — |
| 93 | refactor-research-codeShaishavMaisuria/research-paper-lifecycle-skillsClean research code for public release while preserving reported results. Uses releaseaudit.py to separate safe mechanical cleanup from ask-first behavior risks and identity leaks. Use for release-ready repos, dead experiment branches, config extraction, documented entrypoints, and double-blind code cleanup. | Skill | 60 | A | 60 | — |
| 94 | itasca-mcpyusong652/itasca-mcpMCP server for ITASCA software (PFC, FLAC, 3DEC, MPoint, MassFlow) simulation workflows. Runs locally from the itasca-mcp Python package. | MCP server | 227 | A | — | — |
| 95 | researchDogacel/auto-gpu-kernelClean-context diagnosis for planning next experiments. | Agent | 319 | A | 9 | — |
| 96 | bidsdralkh/seeraiUse this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars… | Skill | 98 | A | 80 | — |
| 97 | research-paper-writingMaster-cai/Research-Paper-Writing-SkillsImprove academic paper writing quality for ML/CV/NLP-style papers with clear section structure, paragraph flow, and reviewer-facing presentation. Use when drafting or revising Abstract, Introduction, Related Work, Method, Experiments, or Conclusion; polishing figures/tables; checking claim-support alignment; or… | Skill | 8.1k | A | 68 | — |
| 98 | abaqus-mcp-serverCai-aa/abaqus-mcpMCP server "abaqus-mcp-server" as configured in Cai-aa/abaqus-mcp. Runs C:/Users/Cai/.abaqus-mcp/mcp_server.py with python. | MCP server | 323 | A | — | — |
| 99 | elsevier-figure-styleguhou-hvi/elsevier-figure-styleGenerate, revise, and audit source-backed quantitative manuscript figures, and visually audit exported schematic/conceptual figures and graphical abstracts without redrawing them in v0.1. Use for Elsevier-style manuscript figure generation, matplotlib or ggplot2 result plots, line charts, heatmaps, bar charts, scatter… | Skill | 89 | A | 105 | — |
| 100 | scipilot-figure-skillHaojae/scipilot-figure-skillA scientific data-visualization adviser that examines a dataset before recommending a chart and preparing a publication-quality figure. | Skill | 2.8k | A | 519 | — |
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