Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add CYC2002tommy/Deep-Research-Agent --skill deep-science-writergit clone --depth 1 https://github.com/CYC2002tommy/Deep-Research-AgentWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/cyc2002tommy/deep-research-agent/deep-science-writer)<a href="https://agentmods.dev/skills/cyc2002tommy/deep-research-agent/deep-science-writer"><img src="https://agentmods.dev/badge/skills/cyc2002tommy/deep-research-agent/deep-science-writer/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/cyc2002tommy/deep-research-agent/deep-science-writer"><img src="https://agentmods.dev/badge/skills/cyc2002tommy/deep-research-agent/deep-science-writer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 4 findings, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium Data Exfiltration · line 154 Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
- medium Data Exfiltration · line 164 Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
- medium Data Exfiltration · line 189 Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
- medium Excessive Agency · line 218 Skill enables autonomous high-impact decisions without human-in-the-loop verification. Critical operations (destructive commands, financial transactions, data deletion) should require explicit user confirmation.Fix: Add human-in-the-loop confirmation for destructive, irreversible, or high-impact operations. Never auto-execute commands that modify files, send data, or alter system state.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00035 | $0.08036 |
| Opus 5 | $0.00017 | $0.04018 |
| Sonnet 5 | $0.00007 | $0.01607 |
| Haiku 4.5 | $0.00003 | $0.00804 |
Grade A, and why
deep-science-writer scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
2. **DOI/URL Liveness Test**: Use the `Bash` tool (via `curl -I`), Exa Search MCP, or a Python script (e.g., `requests.get` / `urllib`) to ping every DOI or URL in the reference list. For bulk or programmatic URL resolut How it starts
The opening of the file, as written. The whole thing — 245 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Deep Science Writer (End-to-End Pipeline)
This skill orchestrates a multi-stage pipeline for scientific research, combining neural search, browser automation, academic synthesis, and humanized writing. It merges the capabilities of Exa Search, Playwright, Google Science Skills, Deep Research, and Text Humanization into one cohesive workflow.
🎯 Trigger Conditions
- User asks to write a scientific article, literature review, or deep-dive research report.
- User requests comprehensive research using web searching and scraping (Exa + Playwright).
- The output requires rigorous academic citations (APA 7th) but a highly natural, human-like reading flow.
📋 Workflow Steps
Phase 0: Mandatory Deep Context Gathering & Research Plan
- Incorporate academic rigor, structured literature parsing, and cross-validation techniques into your approach and keep those principles active in context. Reference material for these lives in the local repos
C:/Users/User/workspace/nature-skills/,C:/Users/User/workspace/academic-research-skills/, andC:/Users/User/workspace/superpowers/— these are not installed skills, so read from them withRead/Greprather than trying to invoke them. - Mandatory Interrogation: You MUST deeply understand the user's current research topic before doing anything else. If the user's initial prompt is too brief, you MUST actively interrogate them to extract their exact pain points, research hypotheses, and core objectives. Do NOT proceed until you fully grasp the context.
- Mandatory Pre-Flight Discussion: Once the context is understood, formulate a preliminary research plan (proposed keywords, target databases, expected article structure, and goals).
- Present this blueprint to the user to discuss the research direction. Focus on delegating the heavy lifting to parallel subagents via
Agentto protect the main context window. - Halt & Wait: You MUST wait for the user's "Explicit Approval" of the research plan before proceeding to Phase 0.5.
What ships with it
9 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
- references/academic-api-patterns.md 4.0 KB
- references/python-docx-manipulation.md 1.7 KB
- scripts/mermaid_to_png.py 2.2 KB runs code
- scripts/node/extract_pdf_text.js 2.1 KB runs code
- scripts/node/fetch_openalex_papers.js 3.7 KB runs code
- scripts/node/fetch_unpaywall_oa.js 2.2 KB runs code
- scripts/node/generate_docx.js 14 KB runs code
- scripts/node/scrape_html_fulltext.js 2.0 KB runs code
- scripts/verify_urls.py 4.3 KB runs code
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 10d ago First seen · 245 lines · 35 tokens per session scan A 17c077e5aca5
deep-science-writer is a skill published in the GitHub repository CYC2002tommy/Deep-Research-Agent (301 stars, last pushed 17d ago), licensed MIT. It adds 35 tokens to every session and 8,036 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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Audit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.