Skill Claude CodeCodex
Execution-ready protein-protein MM/GB(PB)SA workflow with MCP-exposed tool names, strict file validation, and failure guards.
not rated 38
+1 1mo ago A SkillSpector: pass 40 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpretrieveproteinsequence. Search the target protein sequence information from the input gene name or uniprot id.
not rated 38
+1
changed 1mo ago C 52 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpretrieveproteinstructurebygenename, mcpmolclaw-scpretrieveproteinstructurebypdbid, mcpmolclaw-scpretrieveproteinstructurebyuniprotid. Retrieve and download a protein structure file (.pdb or .cif) using a gene name, UniProt ID, or PDB ID.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 106 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpproteinmpnntool. Design or score protein sequences from PDB structures using a ProteinMPNN workflow wrapper.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 51 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scppulchurarebuild. Rebuilds incomplete protein PDB structures with PULCHRA for downstream docking and simulation preparation.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 56 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpmoleculedockingquickvinafullprocess. Perform molecular docking using QuickVina2-GPU between target protein structure and small molecules.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 57 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scplibinventrgroupsamplingbyscaffold, mcpmolclaw-scplibinventrgroupsamplingbyscaffoldname. Generate new molecules sampling from the input scaffold.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 66 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpextractbioemustructures, mcpmolclaw-scprunbioemu. Run BioEmu sequence sampling and extract ensemble structures for downstream conformation analysis.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 66 tokens
original MIT
Skill Claude CodeCodex
Use the configured MolClaw MCP tools through Claude; direct Python SDK access is an optional fallback for standalone scripts.
not rated 38
+1
changed 1mo ago A SkillSpector: warn 30 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpisvalidproteinsequence. Check if the input protein sequence is valid.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 43 tokens
original MIT
Skill Claude CodeCodex
Formats extracted execution patterns into standard MolClaw skill documents. Accepts structured input from the Skill Crystallization Meta-Workflow (L2-12) and outputs a properly formatted L1 or L2 skill document conforming to MolClaw conventions. This skill ensures that auto-generated skills are structurally identical…
not rated 38
+1 1mo ago A SkillSpector: pass 88 tokens
original MIT
Skill Claude CodeCodex
Edit molecular structures in SMILES notation by adding, deleting, or replacing functional groups. Use this skill whenever the user asks to modify a molecule's SMILES by manipulating functional groups (e.g., "delete hydroxyl", "add nitrile", "replace amine with carboxyl"). This skill prevents the most common error…
not rated 38
+1 1mo ago A SkillSpector: pass 0 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpisvalidsmiles. Check if the input molecule SMILES string is valid.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 44 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpvisualizemolecule. Render a molecule from a SMILES string or a server-side molecular structure file with the MolClaw MCP tool visualizemolecule.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 62 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpvisualizeprotein. Render a server-side PDB protein structure as a PNG with the MolClaw MCP tool visualizeprotein.
not rated 38
+1
changed 1mo ago A SkillSpector: pass 58 tokens
original MIT
Skill Claude Code
Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test web pages. Use whenever a browser would be useful, not just when the user explicitly asks.
not rated 38
+1 1mo ago A 51 tokens
copy · 100% MIT
Skill Claude CodeCodex
Multi search engine integration with 17 engines (8 CN + 9 Global). Supports advanced search operators, time filters, site search, privacy engines, and WolframAlpha knowledge queries. No API keys required.
not rated 38
+1 1mo ago A 46 tokens
copy · 100% MIT
Skill Claude CodeCodex
Search PubMed for scientific literature. Use when the user asks to find papers, search literature, look up research, find publications, or asks about recent studies. Triggers on "pubmed", "papers", "literature", "publications", "research on", "studies about".
not rated 38
+1 1mo ago A SkillSpector: pass 63 tokens
original MIT
Skill Claude CodeCodex
Search and fetch structured content from Wikipedia using the MediaWiki API for reliable, encyclopedic information.
not rated 38
+1 1mo ago A SkillSpector: warn 22 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpanalyzemmpbsa, mcpmolclaw-scpgmxmmpbsapropro, mcpmolclaw-scppreparecomplex, mcpmolclaw-scpprepareproteinmd, mcpmolclaw-scprunmmpbsa. Prepare, run, and analyze protein-ligand or protein-protein MM/GB(PB)SA calculations.
not rated 38
+1 1mo ago A 123 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpanalyzeproteinligandinteractions. Analyze protein-small-molecule contacts, interaction types, pocket composition, and steric clashes from a complex PDB.
not rated 38
+1 1mo ago A 64 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpcalculatepdbbasicinfo, mcpmolclaw-scpcalculatepdbcompositioninfo, mcpmolclaw-scpcalculatepdbqualitymetrics, mcpmolclaw-scpcalculatepdbstructuralgeometry, mcpmolclaw-scpcalculateproteinsequenceproperties. Compute sequence properties and basic, geometry, quality…
not rated 38
+1 1mo ago A 121 tokens
original MIT
Skill Claude CodeCodex
Use when calling these MolClaw MCP tools: mcpmolclaw-scpresiduemapper. Map residue indices among UniProt, PDB author numbering, and tool-internal numbering.
not rated 38
+1 1mo ago A 50 tokens
original MIT
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: