Skill Claude CodeCodex
Run OpenMM protein MD and extract evenly spaced trajectory frames for downstream structural analysis.
32 25d ago A 24 tokens
original MIT
Skill Claude CodeCodex
Execution-ready protein-protein MM/GB(PB)SA workflow with MCP-exposed tool names, strict file validation, and failure guards.
32 25d ago A 40 tokens
original MIT
Skill Claude CodeCodex
Search the target protein sequence information from the input gene name or uniprot id.
32 25d ago C 27 tokens
original MIT
Skill Claude CodeCodex
Retrieve and download a protein structure file (.pdb or .cif) using a gene name, UniProt ID, or PDB ID.
32 25d ago A 39 tokens
original MIT
Skill Claude CodeCodex
Design or score protein sequences from PDB structures using a ProteinMPNN workflow wrapper.
32 25d ago A 26 tokens
original MIT
Skill Claude CodeCodex
Rebuilds incomplete protein PDB structures with PULCHRA for downstream docking and simulation preparation.
32 25d ago A 30 tokens
original MIT
Skill Claude CodeCodex
Perform molecular docking using QuickVina2-GPU between target protein structure and small molecules.
32 25d ago A 27 tokens
original MIT
Skill Claude CodeCodex
Generate new molecules sampling from the input scaffold.
32 25d ago A 17 tokens
original MIT
Skill Claude CodeCodex
Run BioEmu sequence sampling and extract ensemble structures for downstream conformation analysis.
32 25d ago A 24 tokens
original MIT
Skill Claude CodeCodex
All tools utilized within MolClaw skills connect via the MCP protocol. This skill is the unified guide for connecting to the deployed MCP server before invoking tools.
32 25d ago A 38 tokens
original MIT
Skill Claude CodeCodex
Check if the input protein sequence is valid.
32 25d ago A 17 tokens
original MIT
Skill Claude CodeCodex
Formats extracted execution patterns into standard MolClaw skill documents. Accepts structured input from the Skill Crystallization Meta-Workflow (L2-12) and outputs a properly formatted L1 or L2 skill document conforming to MolClaw conventions. This skill ensures that auto-generated skills are structurally identical…
32 25d ago A 88 tokens
original MIT
Skill Claude CodeCodex
Edit molecular structures in SMILES notation by adding, deleting, or replacing functional groups. Use this skill whenever the user asks to modify a molecule's SMILES by manipulating functional groups (e.g., "delete hydroxyl", "add nitrile", "replace amine with carboxyl"). This skill prevents the most common error…
32 25d ago A 100 tokens
original MIT
Skill Claude CodeCodex
Check if the input molecule SMILES string is valid.
32 25d ago A 19 tokens
original MIT