molclaw-protein-sequence-retrieve

Retrieve Target Protein Sequence

Invocation

Use the exact tool name and parameter schema exposed by the current harness. Tool names in SDK examples below are raw MCP names, not model-facing aliases. Local files must be uploaded with molclaw-file-transfer before a server tool can use them. Repair PDB inputs first when the workflow requires it.

The description of tool retrieve_protein_sequence.

Retrieve protein sequence data for a given identifier (gene name or uniprot id) and organism.
Args:
    identifier (str): Input gene name (e.g., 'TP53') or uniprot id (e.g., 'P04637')
    organism (str): Required species name, e.g. "Homo sapiens"
Return:
    status (str): success/error
    msg (str): message
    seq_info (dict): A dict containing uniprot_id, gene_name, protein_name, organism, sequence, length

How to use tool retrieve_protein_sequence :

response = await client.session.call_tool(
    "retrieve_protein_sequence",
    arguments={
        "identifier": identifier,
        "organism": organism
    }
)
result = client.parse_result(response)
prot_sequence_info = result["seq_info"]

An example of output sequence information:

{'uniprot_id': 'O76074', 'gene_name': 'PDE5A', 'protein_name': "cGMP-specific 3',5'-cyclic phosphodiesterase", 'organism': 'Homo sapiens', 'length': 875, 'sequence': 'MERAGPSFGQQRQQQQPQQQKQQQRDQDSVEAWLDDHWDFTFSYFVRKATREMVNAWFAERVHTIPVCKEGIRGHTESCSCPLQQSPRADNSAPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSDSEKKEQMPLTPPRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQEKMLINGESGQAKRN', 'query_input': 'PDE5A'}