Skill Claude CodeCodex
Maps laboratory and clinical observation names extracted by OpenMed to LOINC codes using the public Regenstrief LOINC and FHIR terminology APIs. Use when the user wants to code lab tests, vital signs, or observations to LOINC, resolve a test name plus specimen and method to the correct LOINC part-model code, attach…
Skill Claude CodeCodex
Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…
Skill Claude CodeCodex
Searches and fetches PubMed and PMC via NCBI E-utilities (ESearch then EFetch/ESummary) to gather biomedical evidence and build text corpora. Use when the user wants citations for a condition or drug, abstracts to summarize, MeSH-based searches, or a corpus of literature to run NER over. Trigger keywords: PubMed, PMC…
Skill Claude CodeCodex
Normalizes drug mentions extracted by OpenMed to RxNorm RxCUIs using the free public RxNav/RxNorm REST API. Use when the user wants to code, standardize, or de-duplicate medication names, resolve a brand/generic/ingredient to a stable RxCUI, link strength+dose-form to an SCD/SBD, attach NDCs, or build a US Core…
Skill Claude CodeCodex
Parses C-CDA / CCD XML clinical documents to extract human-readable section narrative plus coded entries, keyed by section LOINC codes and templateIds. Use before OpenMed processing when ingesting C-CDA R2.1 documents (CCD, Discharge Summary, H&P, Consultation Note) exported from an EHR and you need the narrative…
Skill Claude CodeCodex
Decodes pipe-delimited HL7 v2.x messages (ADT, ORU, MDM, ORM) into structured segments/fields/components and surfaces OBX-5 and NTE-3 free-text narrative for OpenMed. Use before OpenMed processing when ingesting HL7 v2 feeds from an interface engine, lab/results system, or ADT stream and you need the embedded clinical…
Skill Claude CodeCodex
Parse laboratory values and reference ranges from clinical text and flag results as low, normal, high, or critical with OpenMed. Use when the user needs to interpret lab results, compute abnormal flags, parse reference ranges like "135-145" or "<5", honor an originating-lab flag (H/L/critical), or turn extracted lab…
Skill Claude CodeCodex
Parses free-text clinical-trial eligibility criteria into structured inclusion and exclusion logic, then matches them against patient facts that OpenMed extracted. Use when the user wants to turn a ClinicalTrials.gov eligibility block into machine-readable rules, screen a synthetic patient for trial fit, or explain…
Skill Claude CodeCodex
Select an on-device OpenMed PII model from the committed registry by language, runtime format, and size budget, then require recall validation before deployment. Use when an agent must choose a local PII detector for CPU, Apple Silicon, or a mobile export without relying on live model discovery.
Skill Claude CodeCodex
Apply GDPR-grade pseudonymization to clinical or personal text with OpenMed, keeping a separately-held re-linkage key so the data can be controlled-re-linked later. Use when the user must process EU personal/health data under GDPR, asks for pseudonymization vs anonymization, needs Art. 4(5) / Art. 9 / Recital 26…
Skill Claude CodeCodex
Looks up FDA drug labels, NDC directory entries, indications, boxed warnings, and recalls/enforcement actions via the free public OpenFDA API to enrich drugs that OpenMed extracts. Use when the user wants the prescribing information for a drug, its boxed warning, approved indications, dosage forms and routes, package…
Skill Claude CodeCodex
Call a user-supplied FHIR terminology server ($validate-code, $expand, $lookup, $translate) to validate and expand clinical codes without bundling restricted vocabulary (SNOMED CT, RxNorm, LOINC, ICD-10) into OpenMed. Covers a thin local client, ValueSet $expand with filters/ECL, CodeSystem $lookup, ConceptMap…