jonasscheid/claude-nfcore-plugin
Agent
Autonomously fixes nf-core lint errors and warnings. Use when there are lint issues to fix, after running lint, when preparing for release, or when the pipeline has validation errors.
jonasscheid/claude-nfcore-plugin
Agent
Helps create new nf-core modules from scratch with proper structure, containers, tests, and documentation. Use when wrapping new bioinformatics tools, creating custom modules, or contributing modules to nf-core/modules.
jonasscheid/claude-nfcore-plugin
Agent
Reviews code for nf-core compliance and best practices. Use proactively when reviewing PRs, checking code quality, ensuring nf-core standards are met, or validating pipeline changes before merge.
jonasscheid/claude-nfcore-plugin
Agent
Analyzes existing pipelines and plans architectural changes, migrations, and refactoring. Use when modernizing a pipeline, migrating to strict syntax, restructuring workflows, or planning architectural changes.
jonasscheid/claude-nfcore-plugin
Agent
Explores and analyzes nf-core pipeline structure, understanding workflows, modules, and configurations. Use proactively when needing to understand a pipeline's architecture, trace data flow, find specific processes, or when the user asks how a pipeline works.
jonasscheid/claude-nfcore-plugin
Agent
Creates nf-test tests for modules and workflows. Use when writing tests for new code, improving test coverage, creating snapshot tests, debugging test failures, or setting up testing infrastructure.