browse-files
01Command
List, search, and inspect ENCODE files by format, type, and assembly.
24 1mo ago A 19 tokens
AGPL-3.0
24Stars on the repository
60Mods indexed here, across every type
1mo agoLast push, which is what freshness is scored on
AGPL-3.0Licence, which decides whether bodies are shown
cite-encode
02Command
Generate ENCODE citations for publications, grants, and presentations.
24 1mo ago A 15 tokens
AGPL-3.0
Command
Check if two ENCODE experiments are compatible for combined analysis.
24 1mo ago A 16 tokens
AGPL-3.0
Command
Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv.
24 1mo ago A 21 tokens
AGPL-3.0
Command
Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification.
24 1mo ago A 24 tokens
AGPL-3.0
Command
Log derived files and trace provenance back to ENCODE source data.
24 1mo ago A 17 tokens
AGPL-3.0
Command
Store, check, or clear ENCODE API credentials for restricted data.
24 1mo ago A 17 tokens
AGPL-3.0
Command
Assess ENCODE experiment quality using QC metrics and audit flags.
24 1mo ago A 14 tokens
AGPL-3.0
Command
Search ENCODE experiments by assay, organ, biosample, or target.
24 1mo ago A 18 tokens
AGPL-3.0
Command
Track ENCODE experiments locally with publications and provenance.
24 1mo ago A 14 tokens
AGPL-3.0