friendsofstrandseq/mosaicatcher-pipeline

Integrated workflow for SV calling from single-cell Strand-seq data

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friendsofstrandseq/mosaicatcher-pipeline

Instructions file Gemini CLI

Gemini CLI instructions for friendsofstrandseq/mosaicatcher-pipeline, covering claude.md, project overview, version management, common commands and using pixi (recommended for snakemake v9+).

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