CodeGraphX CLAUDE.md

Project instructions for CodeGraphX, a codebase graph engine for AI agents. They document setup, tests, scanning a codebase, symbol queries, impact tracing, and diagnostics.

In plain words
What is it for?
Use them to set up CodeGraphX for coding assistants, run Jest tests, scan a repository, query symbols, trace a symbol's impact, and run diagnostics.
Why use it?
They show contributors the exact commands for working with the project and checking changes. They also explain how to inspect code relationships and downstream effects.

Instructions file

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add instructions/techcraze00/codegraphx/claude-md
Clone the repo
git clone --depth 1 https://github.com/techcraze00/CodeGraphX
Per session 1,874 This file is loaded in full into every session.
When invoked 1,874 The same file — it is already loaded in full.
Security scan B 1 finding. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.01874 $0.01874
Opus 5 $0.00937 $0.00937
Sonnet 5 $0.00375 $0.00375
Haiku 4.5 $0.00187 $0.00187

Measured yesterday against content hash 7638e1b9123f, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade B, and why

CodeGraphX CLAUDE.md scanned grade B with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Reads agent configuration directoriesmediumAgent snooping

.claude/, .codex/, .gemini/ hold keys, settings and other credentials a mod has no legitimate need for.

| `src/setup/adapters/*.js` | Per-CLI adapters (claude, gemini, antigravity, opencode, cursor): `configureMcp()` (native `<cli> mcp add` → JSON file fallback) + `installSkill()`. MCP cmd = absolute node + bundled `bin/cg
CLAUDE.md · 120 lines

How it starts

The opening of the file, as written. The whole thing — 120 lines — stays where its author put it; the contents beside it link to each section on GitHub.

CLAUDE.md

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

Commands

# One-command setup: wire CodeGraphX (MCP server + skill) into your coding CLIs
node bin/cgx setup                                 # interactive multi-select of detected CLIs
node bin/cgx setup --agents claude,gemini --yes    # non-interactive
node bin/cgx setup --project                        # project scope instead of user/global

# Run all tests
npm test

# Run a single test file
npx jest tests/server/mcp-server.test.js --verbose

# Run tests matching a pattern
npx jest --testNamePattern="should trace impact"

# Scan the local codebase (generates .codegraphx/ artifacts and .codegraphx.db)
node bin/cgx init

# Start the MCP server (stdio transport, used by AI agents)
node bin/cgx-mcp

# Query a symbol
node bin/cgx query <symbolName>

# Trace impact
node bin/cgx impact <symbolName> --direction downstream --depth 5

# Run diagnostics
node bin/cgx doctor --json

Architecture Overview

CodeGraphX is a codebase graph engine for AI agents. It parses source files with Tree-sitter, stores an append-only semantic graph in SQLite (or Postgres), and exposes it via a CLI and an MCP server.

Core data flow

Source files
    → parser.js (Tree-sitter per-language adapters)
    → entities.js (SymbolEntity, FileEntity, EdgeEntity)
    → scanner.js (orchestrates full scan, writes DB + file artifacts)
    → store/sql-store.js (Kysely ORM — append-only temporal DB)

After a scan, the SQLite file (.codegraphx.db in the project root) is the source of truth. The .codegraphx/ directory holds derived artifacts: codegraph.html, codegraph-graph.json, codegraph.toon, file_index.toon, symbols.bloom, and cache.json.

Temporal / bi-temporal storage

The DB schema is intentionally append-only. Rows are never deleted. Instead, every files, symbols, and edges row carries valid_from_commit_id and valid_to_commit_id. NULL in valid_to_commit_id means the row is currently active. This pattern is implemented throughout sql-store.js and the migration in src/db/migrations/001_initial_schema.js.

Read the full file on GitHub · 120 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 120 lines · 1,874 tokens per session scan B 7638e1b9123f

Subscribe to this mod's changes

CodeGraphX CLAUDE.md is an instructions file published in the GitHub repository techcraze00/CodeGraphX (3 stars, last pushed 12d ago), licensed MIT. It adds 1,874 tokens to every session, about $0.0094 per session on Opus 5. A static security scan graded it B with 1 finding (reads agent configuration directories). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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