cheminformatics mcp servers

6 tagged cheminformatics, measured the same way as everything else here.

chemdraw-mcp

01

jurimaxam-dotcom/chemdraw-mcp

MCP server Claude CodeCodexCursor +2

MCP server that turns molecule names or SMILES into publication-style 2D structure drawings (PNG/SVG via RDKit) — reaction schemes, mechanisms, spectra. Unofficial, not affiliated with Revvity. Runs locally from the chemdraw-mcp Python package.

9 17d ago A tokens not measured original Apache-2.0

pubchem-mcp-server

02

cyanheads/pubchem-mcp-server

MCP server Claude CodeCodexCursor +2

Search PubChem compounds, properties, safety data, bioactivity, and cross-references. Runs locally from the @cyanheads/pubchem-mcp-server npm package. Needs 1 environment variable to run.

9 11d ago A tokens not measured original Apache-2.0

cmxflow

03

b-shields/cmxflow

MCP server Claude CodeCodexCursor

A Python package for building and optimizing cheminformatics workflows using Bayesian optimization and LLM agents. Runs locally from the cmxflow Python package.

1 1mo ago A tokens not measured original MIT

chembl-mcp-server

04

cyanheads/chembl-mcp-server

MCP server Claude CodeCodexCursor

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications. Runs locally from the @cyanheads/chembl-mcp-server npm package. Needs 8 environment variables to run.

1 7d ago A tokens not measured original Apache-2.0

chemspace-mcp

05

lukasmki/chemspace-mcp

MCP server Claude CodeCodexCursor

MCP server "chemspace-mcp" as configured in lukasmki/chemspace-mcp. Runs locally from the chemspace-mcp Python package.

1 9mo ago A tokens not measured original MIT