viral-ngs: command line tools and wrappers for processing raw viral genomic data
Skill Claude CodeCodex
Reusable infrastructure for invoking Claude (via anthropics/claude-code-action) on Google Vertex AI from GitHub Actions workflows in this repo. Authentication is via Workload Identity Federation — no long-lived secrets.
Skill Claude CodeCodex
Guidance for scanning, triaging, and mitigating container image vulnerabilities in the viral-ngs Docker image hierarchy.
Skill Claude CodeCodex
Use dsub to run one-off compute jobs on Google Cloud when your analysis requires more compute/memory than the local environment, or needs specific Docker images that are impractical to run locally.
Skill Claude CodeCodex
End-to-end regression testing for assembly pipeline changes against Terra submissions.