Normalize and batch-import DOIs into ResearchBrain, resolve bibliographic metadata, find lawful open-access PDFs, store them locally by content hash, and track parsing and embedding. Use when Codex receives one or more DOIs, needs to obtain available PDFs, must avoid duplicate literature, or must report whether each…
Conduct evidence-grounded literature research by having Codex directly search and synthesize ResearchBrain full-text evidence, then extend coverage with Crossref, OpenAlex, arXiv, and PubMed metadata. Use for literature reviews, method and dataset comparisons, research-gap analysis, DOI-backed reports, paper-specific…
Attach user-selected local PDFs or process ResearchBrain-managed PDFs into deduplicated objects, structured Markdown, document artifacts, chunks, and vectors using MinerU with PyMuPDF fallback. Use when Codex is asked to import a PDF, convert PDF to Markdown, parse Zotero attachments, resume failed document…
Build, complete, and audit ResearchBrain vector indexes for bibliographic metadata, abstracts, and parsed PDF full text. Use when Codex is asked to vectorize a library, repair missing embeddings, check index coverage, process only incremental gaps, or verify that literature is searchable.
Incrementally synchronize a local Zotero library into a ResearchBrain mirror, including metadata changes, deletions, linked PDF attachments, parsing, and downstream indexing. Use when Codex is asked to import newly added Zotero papers, sync only changes since the last run, diagnose missing Zotero items or PDFs, or…