molecule skills

23 tagged molecule, measured the same way as everything else here.

Browse within: EM 20fdtd 20light-matter 20polariton 20

molecode

01

AtomFlow-AI/MoleCode

Skill Claude CodeCodex

Use for deterministic molecule understanding, graph-level editing, generation, and validation with MoleCode — an explicit Mermaid graph in which every atom and bond is a typed, named node/edge. Converting SMILES to MoleCode exposes the molecule as explicit atoms, hydrogen counts, bonds, bond orders, stereochemistry…

297 2mo ago A 209 tokens original MIT

mxl-driver-dftbplus

02

TaoELi/MaxwellLink

Skill Claude CodeCodex

This skill should be used when users want to couple MaxwellLink to the MaxwellLink-aware DFTB+ fork via the MaxwellLinkSocket block, including real-time Ehrenfest dynamics, VelocityVerlet Born-Oppenheimer MD, dipole-derivative choices, build/install, and TCP/UNIX socket connection patterns.

10 7d ago A 75 tokens GPL-2.0

mxl-multimode

03

TaoELi/MaxwellLink

Skill Claude CodeCodex

This skill should be used when users need the MaxwellLink multimode Fabry-Pérot cavity solver to study a spatial grid of molecules coupled to many photonic modes (mesoscale VSC), in either socket or embedded mode.

10 7d ago A 54 tokens GPL-2.0

TaoELi/MaxwellLink

Skill Claude CodeCodex

Dual-purpose tutorial to reproduce manuscript Figure 5b, 5d, and 5e plasmonic flux and HCN heating maps (EM-only, TLS, and ASE/BOMD), and to transfer the workflow to related plasmon-molecule systems by adjusting geometry, molecular model, and run procedures.

10 7d ago A 72 tokens GPL-2.0