Skill Claude CodeCodex
Render academic Markdown documents (English or Korean) to publication-quality PDF via pandoc + xelatex. Targets non-bibliography artifacts: research proposals, IRB cover letters, briefing handouts, anchor docs (Q&A grids), and reference tables. Auto-infers pipe-table column widths from content (label column shrinks to…
Skill Claude CodeCodex
Replicate an existing cohort study's methodology on a different database. Extracts study design from a source paper, maps variables to the target DB via harmonization table, generates analysis code, and produces a replication difference report.
Skill Claude CodeCodex
Scaffold and draft medical/AI literature reviews (narrative, scoping PRISMA-ScR, or systematic). Asks for the spine axis, builds a 7-part skeleton with a required Intro scope/non-overlap block, a summary-table stub, an evaluation-metrics critique subsection, and reporting-guideline wiring. Reuses the self-review…
Skill Claude CodeCodex
Parse peer reviewer comments and generate a structured Response to Reviewers document with tracked manuscript changes. Classifies comments as MAJOR/MINOR/REBUTTAL, coordinates new analyses with /analyze-stats and /make-figures, and produces cover letter for editor.
Skill Claude CodeCodex
Literature search and citation management for medical research. Searches PubMed, Semantic Scholar, and bioRxiv/medRxiv with verified citations. Anti-hallucination — every reference verified via API before inclusion. Generates BibTeX entries.
Skill Claude CodeCodex
Pre-submission self-review for the user's own manuscripts, applying a reviewer perspective. Systematic check across 10 categories with research-type branching. Outputs Anticipated Major/Minor Comments with severity framing and optional R0 numbering for /revise pipeline integration.
Skill Claude CodeCodex
Diagnostic checklist for the MedSci Skills runtime. Verifies Python, R, Node, Claude Code, Git, Zotero, and configured MCP servers, and prints a pass/fail table with links to the right setup doc for any missing component. Read-only — does not install anything.
Skill Claude CodeCodex
Audit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.
Skill Claude CodeCodex
Design or audit the uncertainty-quantification, out-of-distribution (OOD) detection, and selective-prediction layer of a medical-imaging model framed for deployment — so a clinical-use claim carries calibrated per-case uncertainty (MC-dropout / deep ensemble / conformal / Bayesian), an OOD guard validated on a…
Skill Claude CodeCodex
Audit-only verification of manuscript references against PubMed and CrossRef. Detects fabricated or mismatched citations and writes qc/referenceaudit.json. Does not modify references/ or refs.bib.
Skill Claude CodeCodex
Dataset version control for research reproducibility. Builds a deterministic content-hash manifest of a dataset (file SHA-256 + tabular schema + per-column value hashes), verifies a later copy against it to detect drift (schema change, row-count change, value changes), and diffs two manifests. Use to prove an analysis…
Skill Claude CodeCodex
Full-pipeline medical/scientific paper writing. 8-phase IMRAD workflow from outline to submission-ready manuscript. Supports original articles, case reports, case series, meta-analyses, AI validation studies, animal studies, and technical notes. Do NOT trigger for self-checking (use self-review instead).