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sync-submission

sync-submission is a skill for Claude Code from Aperivue/medsci-skills. It costs 21 tokens per session (9,941 once invoked), scanned A, original, MIT.

A checker and package builder for keeping a journal submission consistent with the canonical manuscript, the main approved version of the paper.

In plain words
What is it for?
Use it to audit differences, build a journal-specific submission package, and mark a package as submitted.
Why use it?
It shows whether a submission is current, outdated, or frozen after changes made in a journal portal or word processor.

Skill for Claude Code

Written for Claude Code: ${CLAUDE_SKILL_DIR} variable. Also seen: model in frontmatter.

Part of the medsci-submission plugin — 6 skills shipped together

not rated 291repo +8 changed 4d ago A scan SkillSpector: pass 21 tokens original MIT

Good fit Use it to audit differences, build a journal-specific submission package, and mark a package as submitted.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/aperivue/medsci-skills/sync-submission
View source ↗ Aperivue/medsci-skills aperivue.com
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Aperivue/medsci-skills --skill sync-submission
Clone the repo
git clone --depth 1 https://github.com/Aperivue/medsci-skills

Made for: Claude Code.

Or install medsci-submission, the plugin that ships this one along with the rest of its 6 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for sync-submission

README.md
[![agentmods](https://agentmods.dev/badge/skills/aperivue/medsci-skills/sync-submission/github.svg)](https://agentmods.dev/skills/aperivue/medsci-skills/sync-submission)
Your own site
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/sync-submission"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/sync-submission/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for sync-submission

Your own site · 80×15
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/sync-submission"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/sync-submission.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 21 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 9,941 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00021 $0.09941
Opus 5 $0.00010 $0.04970
Sonnet 5 $0.00004 $0.01988
Haiku 4.5 $0.00002 $0.00994

Measured 4d ago against content hash f7b831bc5999, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

sync-submission scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

The scan reads SKILL.md. This mod also ships 26 executable files (examples/build_synthetic_bundle.py, scripts/_quote_match.py, scripts/_yaml_frontmatter.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/sync-submission/SKILL.md · 574 lines

How it starts

The opening of the file, as written. The whole thing — 574 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Sync Submission

You help keep the canonical manuscript and journal-specific submission packages from drifting apart. The skill treats submission/{journal}/ as derived output and records whether it is current, stale, or frozen.

When to Use

  • Before submitting a journal package.
  • After a journal portal or Word editor changed a submission manuscript.
  • After rejection, before retargeting to another journal.
  • Before /orchestrate --e2e marks a project as submission-ready.

Inputs

  1. Project root containing project.yaml, or a direct canonical manuscript path.
  2. Journal short name, e.g. chest, ryai, academic_radiology.
  3. Optional mode:
    • audit: compare existing submission against canonical source.
    • build: copy canonical source and optional declared final artifacts, preserving file bytes, and write metadata.
    • freeze: freeze the chosen byte snapshot with its available check context (not submission approval).

Deterministic Script

python "${CLAUDE_SKILL_DIR}/scripts/sync_submission.py" audit --project-root . --journal chest
python "${CLAUDE_SKILL_DIR}/scripts/sync_submission.py" build --project-root . --journal chest
python "${CLAUDE_SKILL_DIR}/scripts/sync_submission.py" freeze --project-root . --journal chest --status submitted

For double-blind journals, sweep author identifiers across all upload artifacts:

python "${CLAUDE_SKILL_DIR}/scripts/blind_sweep.py" \
  --registry _shared/authors/author_registry.yaml \
  --files submission/{journal}/supplementary/*.md submission/{journal}/cover_letter.md \
  --backup-dir .cache/blind_sweep_backup

The registry is a project-local YAML mapping author identifiers (full names, native scripts, initials with/without periods, email, ORCID) to role labels (e.g., "Reviewer 1"). See scripts/author_registry_example.yaml for schema. Never commit a populated registry to a public repository — keep it next to the manuscript.

Output Contract

Artifact Path Purpose
Submission metadata submission/{journal}/.journal_meta.json Source hash, status, canonical path
Sync audit qc/submission_sync_{journal}.json Drift result consumed by orchestrator
Manifest update artifact_manifest.json Submission package registry
Pre-flight gate qc/preflight_gate_report.json Aggregated halt-on-failure manifest (see "Pre-flight gate" below)
Supplement structure qc/supplement_structure.json Gate 14: index↔file 1:1, sub-section gaps, callout coverage

Read the full file on GitHub · 574 lines

Files

What ships with it

60 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago Changed · +16 lines f7b831bc5999
  2. 11d ago First seen · 558 lines · 21 tokens per session scan A 016b88b1d495

Subscribe to this mod's changes

sync-submission is a skill published in the GitHub repository Aperivue/medsci-skills (291 stars, last pushed 3d ago), licensed MIT. It adds 21 tokens to every session and 9,941 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Claude CodeDocumentsScientificbiostatisticsclaude-skillsclinical-researchdiagnostic-accuracyliterature-review
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