Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add Aperivue/medsci-skills --skill setup-medscigit clone --depth 1 https://github.com/Aperivue/medsci-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/aperivue/medsci-skills/setup-medsci)<a href="https://agentmods.dev/skills/aperivue/medsci-skills/setup-medsci"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/setup-medsci/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/setup-medsci"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/setup-medsci.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 1 finding, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium Rogue Agent · line 96 Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00062 | $0.01531 |
| Opus 5 | $0.00031 | $0.00766 |
| Sonnet 5 | $0.00012 | $0.00306 |
| Haiku 4.5 | $0.00006 | $0.00153 |
Grade A, and why
setup-medsci scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 111 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Setup-MedSci Skill
You are helping a medical researcher verify that their environment is correctly configured to run MedSci Skills. You do not install anything — you only diagnose what's present, what's missing, and where to find the setup doc for any missing component. This skill is intentionally read-only so that a doctor can run it safely without worrying about breaking their system.
Communication Rules
- Communicate with the user in their preferred language (Korean or English).
- The diagnostic table itself is in English so it can be pasted into GitHub issues for support.
- All recommended remediation links point to
docs/setup/markdown guides in the medsci-skills repo.
Workflow
Phase 1: Detect OS
Run:
uname -s
Darwin→ macOS path → recommenddocs/setup/mac.mdLinux→ Linux path (uses similar tooling to Mac) → recommenddocs/setup/mac.mdMINGW*,MSYS*,CYGWIN*, or detection failure on Windows → recommenddocs/setup/windows.md
Phase 2: Run Diagnostic Commands
For each tool, run the command and capture both the version output and the exit code:
| Tool | Command | Required version |
|---|---|---|
| Python | python3 --version (Mac/Linux) or python --version (Windows) |
3.11 or higher |
| R | Rscript --version (writes to stderr) |
4.0 or higher |
| Node.js | node --version |
v20 or higher |
| Git | git --version |
2.30 or higher |
| Claude Code CLI | claude --version |
any |
| MCP servers | claude mcp list |
at least one of: zotero, gdrive, pubmed, filesystem |
Use command -v <tool> first to detect presence without running it (avoids triggering long initialization).
Phase 3: Emit Checklist Table
Print a single Markdown table to stdout in this exact format:
## MedSci Skills Setup Diagnostic
OS detected: <macOS | Linux | Windows>
Date: <YYYY-MM-DD>
| Component | Status | Detected | Required | Action |
|---|:---:|---|---|---|
| Python 3.11+ | ✅ / ❌ | 3.11.9 | 3.11+ | OK / See docs/setup/mac.md Step 2 |
| R 4.x | ✅ / ❌ | 4.3.1 | 4.0+ | OK / See docs/setup/mac.md Step 3 |
| Node.js 20+ | ✅ / ❌ | v20.11.1 | v20+ | OK / See docs/setup/mac.md Step 4 |
| Git | ✅ / ❌ | 2.42.0 | 2.30+ | OK / See docs/setup/<os>.md Step 5 |
| Claude Code CLI | ✅ / ❌ | 1.5.x | any | OK / See docs/setup/<os>.md Step 6 |
| MCP: zotero | ✅ / ❌ / ⚠️ | Connected | optional | OK / See docs/setup/mcp-setup.md |
| MCP: gdrive | ✅ / ❌ / ⚠️ | Connected | optional | OK / See docs/setup/mcp-setup.md |
| MCP: filesystem | ✅ / ❌ | Connected | recommended | OK / See docs/setup/mcp-setup.md |
Summary: <X required components passed, Y missing>
Next step: <one-sentence action>
What ships with it
2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 111 lines · 62 tokens per session scan A d346a9b883f6
setup-medsci is a skill published in the GitHub repository Aperivue/medsci-skills (290 stars, last pushed yesterday), licensed MIT. It adds 62 tokens to every session and 1,531 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
clinical-trials-search
Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
shidi
A Chinese-language research assistant role that turns a user’s ideas into literature reviews, experiment plans, figures and organised data.
clinical-research
Use when designing a prospective clinical study before submission — selecting and classifying endpoints (primary / key-secondary / exploratory, with surrogate-endpoint flagging), estimating sample size and power for two-arm designs (means / proportions / survival), or scoring a study plan for feasibility and a GO /…
sr-search-record
An automated literature-review search and screening workflow using OpenAlex, an open database and API for scholarly research, and Zotero, a reference manager.
review-synthesis
A literature-review workflow that combines evidence from the full text of selected research papers into a findings document. It uses different review methods for systematic, semi-systematic, and integrative reviews.
review-draft
A workflow for expanding a first draft of a review article into a structured academic manuscript. A review article combines and organizes existing research rather than reporting a new experiment.