Skill Claude CodeCodex
Use when make ci-local fails locally or a GitHub Actions run reports a CI failure (format, lint, line-budget, typecheck, or test errors).
Skill Claude CodeCodex
Use when make ci-local fails locally or a GitHub Actions run reports a CI failure (format, lint, line-budget, typecheck, or test errors).
Skill Claude CodeCodex
Use when reviewing a diff, PR, or change set for correctness and quality before merge or handoff. For a deep security-only pass, use security-review instead.
Skill Claude CodeCodex
Use when handling Dependabot PRs, CodeQL/Trivy alerts, or doing a routine dependency/CVE sweep for this repo.
Skill Claude CodeCodex
Use when adding, renaming, or modifying this backend's FastAPI routes, dependencies, middleware, or response behavior.
Skill Claude CodeCodex
Use when bringing this repo into compliance with a GeneFoundry fleet standard (tool-naming, response-envelope, container-hardening, versioning, MCP transport, or logging) or closing its tracking issue.
Skill Claude CodeCodex
Use when adding, renaming, or changing this backend's MCP tools, resources, prompts, or input/output schemas.
Skill Claude CodeCodex
Use when preparing to tag, publish, or promote a hpo-link build.
Skill Claude CodeCodex
Use when reviewing this backend for security before deploy, when touching auth/logging/upstream-fetch/container config, or when answering an infosec/DSB question.
Instructions file CodexOpenCode
AGENTS.md instructions for berntpopp/hpo-link, covering agents.md — hpo-link, what this is, two planes (non-negotiable boundary), architecture: ingest → data dao → services → mcp and invariants.
Instructions file
Claude Code instructions for berntpopp/hpo-link, covering claude.md, role, directory layout, key make commands and tl;dr lint / test / build.
MCP server Claude CodeCodexCursor
MCP server "hpo-link" as configured in berntpopp/hpo-link. Runs locally from the hpo-link Python package.
Skill Claude CodeCodex
Use when make ci-local fails locally or a GitHub Actions run reports a CI failure (format, lint, line-budget, typecheck, or test errors).
Skill Claude CodeCodex
Use when reviewing a diff, PR, or change set for correctness and quality before merge or handoff. For a deep security-only pass, use security-review instead.
Skill Claude CodeCodex
Use when handling Dependabot PRs, CodeQL/Trivy alerts, or doing a routine dependency/CVE sweep for this repo.
Skill Claude CodeCodex
Use when adding, renaming, or modifying this backend's FastAPI routes, dependencies, middleware, or response behavior.
Skill Claude CodeCodex
Use when bringing this repo into compliance with a GeneFoundry fleet standard (tool-naming, response-envelope, container-hardening, versioning, MCP transport, or logging) or closing its tracking issue.
Skill Claude CodeCodex
Use when adding, renaming, or changing this backend's MCP tools, resources, prompts, or input/output schemas.
Skill Claude CodeCodex
Use when preparing to tag, publish, or promote a uniprot-link build.
Skill Claude CodeCodex
Use when reviewing this backend for security before deploy, when touching auth/logging/upstream-fetch/container config, or when answering an infosec/DSB question.
Instructions file CodexOpenCode
AGENTS.md instructions for berntpopp/uniprot-link, covering agents.md, project, source of truth, working rules and sparql / qlever discipline.
Instructions file
Claude Code instructions for berntpopp/uniprot-link, a project described as: MCP server for UniProt: protein function, sequence, features and cross-references over the UniProt SPARQL endpoint — intent-named tools plus a guarded raw-SPARQL escape hatch.
MCP server Claude CodeCodexCursor
MCP server "uniprot-link" as configured in berntpopp/uniprot-link. Runs locally from the uniprot-link Python package.
Skill Claude CodeCodex
Use when make ci-local fails locally or a GitHub Actions run reports a CI failure (format, lint, line-budget, typecheck, or test errors).
Skill Claude CodeCodex
Use when reviewing a diff, PR, or change set for correctness and quality before merge or handoff. For a deep security-only pass, use security-review instead.