berntpopp/hpo-link

MCP server for the Human Phenotype Ontology (HPO): phenotype term lookup, the is_a hierarchy, cross-ontology mapping, and gene–phenotype–disease associations from HPO and HPOA.

1Stars on the repository
11Mods indexed here, across every type
4d agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown

ci-failure-triage

01

berntpopp/hpo-link

Skill Claude Code

Use when make ci-local fails locally or a GitHub Actions run reports a CI failure (format, lint, line-budget, typecheck, or test errors).

not rated 1 4d ago A 41 tokens copy · 100% MIT

code-quality-review

02

berntpopp/hpo-link

Skill Claude Code

Use when reviewing a diff, PR, or change set for correctness and quality before merge or handoff. For a deep security-only pass, use security-review instead.

not rated 1 4d ago A 37 tokens copy · 100% MIT

berntpopp/hpo-link

Skill Claude Code

Use when handling Dependabot PRs, CodeQL/Trivy alerts, or doing a routine dependency/CVE sweep for this repo.

not rated 1 4d ago A 33 tokens copy · 94% MIT

berntpopp/hpo-link

Skill Claude Code

Use when adding, renaming, or modifying this backend's FastAPI routes, dependencies, middleware, or response behavior.

not rated 1 4d ago A 29 tokens original MIT

berntpopp/hpo-link

Skill Claude Code

Use when bringing this repo into compliance with a GeneFoundry fleet standard (tool-naming, response-envelope, container-hardening, versioning, MCP transport, or logging) or closing its tracking issue.

not rated 1 4d ago A 46 tokens copy · 97% MIT

mcp-tool-change

06

berntpopp/hpo-link

Skill Claude Code

Use when adding, renaming, or changing this backend's MCP tools, resources, prompts, or input/output schemas.

not rated 1 4d ago A 29 tokens original MIT

release-readiness

07

berntpopp/hpo-link

Skill Claude Code

Use when preparing to tag, publish, or promote a hpo-link build.

not rated 1 4d ago A 20 tokens original MIT

security-review

08

berntpopp/hpo-link

Skill Claude Code

Use when reviewing this backend for security before deploy, when touching auth/logging/upstream-fetch/container config, or when answering an infosec/DSB question.

not rated 1 4d ago A 36 tokens original MIT

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