Skill Claude CodeCodex
Predict gene and transcript structure (intervals, exons, strand) from a DNA sequence using the Genomic Intelligence DNA Annotation model, via the hosted /v1/tasks/annotation/predict API. Submitted asynchronously — the pipeline takes 20 s for 20 kbp.
Skill Claude CodeCodex
Predict chromatin state — histone marks, DNase, TF binding — across 919 tracks (DeepSEA-style) for DNA sequences, via the hosted Genomic Intelligence /v1/tasks/chromatin/predict API.
Skill Claude CodeCodex
Predict enhancer activity in DNA sequences using the Genomic Intelligence G0 DeepSTARR model, via the hosted /v1/tasks/enhancer/predict API. Returns per-window activity scores.
Skill Claude CodeCodex
Predict tissue / cell-type expression (log TPM + TPM) from a 9,198–500,000 bp TSS-centered DNA sequence (longer than one 9,198 bp window needs --tss-index) using the Genomic Intelligence G0 Expression model, via the hosted /v1/tasks/expression/predict API. The model is conditioned on a free-text cell-type / assay…
Skill Claude CodeCodex
Detect promoter regions in DNA sequences using the Genomic Intelligence G0 transformer (GENA-LM BERT Large), via the hosted /v1/tasks/promoter/predict API. Returns per-window promoter probabilities and called regions.
Skill Claude CodeCodex
Detect splice donor and acceptor sites in DNA sequences using the Genomic Intelligence G0 BigBird transformer, via the hosted /v1/tasks/splice/predict API. Returns per-position site probabilities and called sites.
Skill Claude CodeCodex
Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. Use when an agent needs GWAS beta / SE / p-value for every variant in a window for one specific study (GCST accession). Input: accession, chromosome, start, end. Output: harmonised TSV slice in canonical…
Skill Claude CodeCodex
Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.
Skill Claude CodeCodex
End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. Produces Manhattan plots, QQ plots, clumped lead variants, and structured summary statistics.
Skill Claude CodeCodex
Calculate polygenic risk scores from DTC genetic data using the PGS Catalog.
Skill Claude CodeCodex
HLA allele typing from WGS/WES VCF data.
Skill Claude CodeCodex
Import DRAGEN-exported Illumina result bundles into ClawBio for local tertiary analysis and downstream routing.