ClawBio

ClawBio/ClawBio

Plugin Claude Code

Plugin marketplace listing 1 plugin: clawbio.

ClawBio/ClawBio

Plugin Claude Code

Bioinformatics-native AI agent skill library — pharmacogenomics, ancestry, scRNA-seq, metagenomics, variant annotation, genome comparison, and more. 24 skills with deterministic Python execution, reproducibility bundles, and local-first privacy.

ClawBio/ClawBio

Instructions file CodexOpenCode

AGENTS.md instructions for ClawBio/ClawBio, covering agents.md — clawbio guide for ai coding agents, project overview, setup, clone and install dependencies.

ClawBio/ClawBio

Instructions file

Claude Code instructions for ClawBio/ClawBio, covering claude.md — clawbio agent instructions, homepage (index.html) — strict, key files, slash commands and skill routing table.

ClawBio/ClawBio

Command

Run a ClawBio bioinformatics analysis on user-provided genetic data.

ClawBio/ClawBio

Command

List all available ClawBio bioinformatics skills with their status and capabilities.

ClawBio/ClawBio

Command

Build a new ClawBio skill from the official template with full conformance enforcement.

ClawBio/ClawBio

Command

Run a ClawBio skill demo with built-in sample data.

ClawBio/ClawBio

Skill Claude CodeCodex

Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, RFU). Platform-aware QC, normalisation, differential abundance, volcano plots, heatmaps, and PCA.

ClawBio/ClawBio

Skill Claude CodeCodex

Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.

ClawBio/ClawBio

Skill Claude CodeCodex

Infers genetic super-population ancestry from a 23andMe/AncestryDNA file and computes ancestry-stratified odds ratios with an exploratory Ancestry Elevation Score (AES) showing where ancestry-specific GWAS effect sizes diverge from European reference estimates.

ClawBio/ClawBio

Skill Claude CodeCodex

Detect Neanderthal and Denisovan introgression segments from modern human genomes.

ClawBio/ClawBio

Skill Claude CodeCodex

Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public repositories such as GEO, ENA, Zenodo, Figshare, Dryad, and OSF.

ClawBio/ClawBio

Skill Claude CodeCodex

Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata fields per paper.

ClawBio/ClawBio

Skill Claude CodeCodex

Run read-only SQL against BigQuery public datasets with local result capture, cost safeguards, and reproducibility outputs.

ClawBio/ClawBio

Skill Claude CodeCodex

Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.

ClawBio/ClawBio

Skill Claude CodeCodex

Bioconductor package discovery, workflow recommendation, setup inspection, and starter code generation grounded in official Bioconductor containers and BiocManager.

ClawBio/ClawBio

Skill Claude CodeCodex

Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. Exposes an MCP stdio server for live AI integration alongside a ClawBio CLI runner.

ClawBio/ClawBio

Skill Claude CodeCodex

Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage support, and full demo mode without the BUSCO binary.

ClawBio/ClawBio

Skill Claude CodeCodex

Cell segmentation in fluorescence microscopy images. Supports Cellpose/cpsam (Cellpose 4.0) with additional backends planned. Produces segmentation masks, per-cell morphology metrics (area, diameter, centroid, eccentricity), overlay figures, and a report.md.

ClawBio/ClawBio

Skill Claude CodeCodex

Given a gene and a single-cell atlas, compute how cell-type-specific its expression is — the tau specificity index, Sarle's expression bimodality coefficient, and the cell types that drive the signal; a pure analytic transform that chains downstream of scrna-embedding.

ClawBio/ClawBio

Skill Claude CodeCodex

Ancestry decomposition PCA against the Simons Genome Diversity Project.

ClawBio/ClawBio

Skill Claude CodeCodex

Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways.

ClawBio/ClawBio

Skill Claude CodeCodex

Methylation cycle analysis — enzymatic activity profiles, Net Methylation Capacity, BH4 axis estimates, compound heterozygosity detection from SNP genotype data.