Semi-automated research assistant and local knowledge base for paper analysis, ideation, coding, experiments, writing, and publication workflows.
Skill Claude CodeCodex
Retrieves code-context-relevant papers from the local knowledge base in two modes (brief/deep), using obsidian-vault/analysis/ as the primary retrieval source and obsidian-vault/paperPDFs/ for optional deeper reading. obsidian-vault/index/ is optional and mainly serves statistics, Obsidian navigation, and backlink…
Skill Claude CodeCodex
Migrates BITE's architecture to a new professional domain (e.g. frontend development, accounting, journalism). Interactive session with the user to map research concepts to domain equivalents, then generates a complete set of adapted skills and folder structure. Explicit trigger only.
Skill Claude CodeCodex
Guides research ideation from broad thoughts to a focused, testable plan with explicit scope cuts, prioritized hypotheses, and immediate next experiments. Use when the user wants co-creation and step-by-step narrowing, not review verdicts.
Skill Claude CodeCodex
Converts internal research notes into shareable Obsidian-friendly Markdown files. Use when the user explicitly asks to make a share version, export a note for sharing, hide knowledge base traces, replace internal wiki links with public paper links, rewrite internal wording for external readers, or generate a…
Skill Claude CodeCodex
Runs a unified metadata consistency audit across obsidian-vault/analysis logs and analysis notes, checking title/venue/year consistency, link/pdfref completeness, duplicates, and structure anomalies; writes qualityreport.md under obsidian-vault/batches/reports.
Skill Claude CodeCodex
Batch-analyzes papers from a user-provided CSV or obsidian-vault/paperlist.csv by splitting the list into safe per-batch CSVs, spawning parallel worker agents, writing analysis notes under obsidian-vault/analysis/, and refreshing obsidian-vault/index/ after all completed batches. Use when the user asks to analyze many…
Skill Claude CodeCodex
Builds/refreshes obsidian-vault/index/index.jsonl and Obsidian navigation pages from obsidian-vault/paperlist.csv when present, enriched by obsidian-vault/analysis/ frontmatter when available. Use after completed analysis batches or when users ask to rebuild the local paper index.
Skill Claude CodeCodex
Collects paper candidates from any GitHub repository README or docs — awesome lists, survey companion repos, lab paper lists, conference accepted-paper repos, benchmark leaderboards, etc. Agent fetches the README (or specified doc), analyzes its format, writes a one-off parser, and outputs rows aligned with…
Skill Claude CodeCodex
Collects paper candidates from non-GitHub web URLs — conference sites, lab homepages, proceedings pages, Google Scholar results, blog posts with paper lists, etc. Fetches and stores pages locally, then appends rows to obsidian-vault/paperlist.csv. Use when the user provides web URLs (not GitHub repos) + keyword…
Skill Claude CodeCodex
Uses colocated paper download tools to download, verify, and repair local PDFs from obsidian-vault/paperlist.csv rows so that obsidian-vault/paperPDFs/ stays complete and deduplicated. Use when candidate rows are in state=Wait and should become Downloaded before the formal analysis chain.
Skill Claude CodeCodex
Queries the local obsidian-vault/analysis/ notes for research. Finds papers by title, task path, technique tags, venue, or year; summarizes methods and evidence across papers; cites coreoperator and primarylogic from analysis frontmatter. When present, obsidian-vault/index/index.jsonl serves as the fast filter layer…
Skill Claude CodeCodex
Explores and structures research ideas into obsidian-vault/ideas/ notes using the local paper knowledge base and frontier techniques. Use when the user provides research questions or ideas and wants decomposed candidate directions, related-work analysis based primarily on obsidian-vault/analysis, and cross-domain…
Skill Claude CodeCodex
Unified entry for the research pipeline. Maps current work to one stage (import-local-pdfs/collect/download/analyze/build/query/ideate/focus/review/audit/export), recommends the right existing skill/command, supports step-by-step and end-to-end guidance, and keeps stage boundaries clear without duplicating underlying…
Skill Claude CodeCodex
Runs a strict-but-fair ICLR/CVPR/SIGGRAPH reviewer challenge on idea, roadmap, or full paper, with major-risk diagnostics and actionable repair paths. Use when the user wants high-pressure review questioning instead of brainstorming.
Skill Claude CodeCodex
Obsidian Flavored Markdown conventions for BITE. Use when generating or editing any .md file in the vault (analysis notes, indexes, idea notes, wiki pages). Ensures all output is Obsidian-native and renders correctly in reading view, graph view, and backlink panels. Adapted from kepano/obsidian-skills (MIT).
Skill Claude CodeCodex
Detects post-invocation skill mismatch patterns, summarizes why they may recur, and asks whether to revise the skill now. Use when a called .claude skill output is clearly unfit for the user intent and similar mismatch is likely to happen again.
Skill Claude CodeCodex
Generates or updates a structured daily research log by collecting evidence from git diffs, artifacts, and conversation context, then compressing into a decision-oriented summary. Use when the user says "写日志", "write daily log", "日报", "update daily summary", or asks to summarize today's research progress.