BITE: Skill for Claude Code

.claude/skills/research-workflow/SKILL.md

research-workflow is a skill for Claude Code from RipeMangoBox/BITE. It costs 69 tokens per session (1,206 once invoked), scanned A, original, MIT.

A single entry point for managing a research workflow from collecting papers and analysing PDFs to querying, reviewing, and exporting findings.

In plain words
What is it for?
Use it to import local PDFs, collect or download research, build a knowledge base, ask questions, compare papers, develop ideas, focus a topic, review work, audit it, or export results.
Why use it?
It helps you choose the right research stage and existing tool without mixing tasks or losing track of what each stage receives and produces.

Skill for Claude Code

Written for Claude Code: installed under .claude/.

This is RipeMangoBox/BITE's own configuration. It tells Claude Code how to work on BITE itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything BITE configures →

Reuse

Borrowing it

Nothing to install: this file belongs to RipeMangoBox/BITE. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/RipeMangoBox/BITE/main/.claude/skills/research-workflow/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/RipeMangoBox/BITE

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-workflow

README.md
[![agentmods](https://agentmods.dev/badge/skills/ripemangobox/bite/research-workflow/github.svg)](https://agentmods.dev/skills/ripemangobox/bite/research-workflow)
Your own site
<a href="https://agentmods.dev/skills/ripemangobox/bite/research-workflow"><img src="https://agentmods.dev/badge/skills/ripemangobox/bite/research-workflow/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-workflow

Your own site · 80×15
<a href="https://agentmods.dev/skills/ripemangobox/bite/research-workflow"><img src="https://agentmods.dev/badge/skills/ripemangobox/bite/research-workflow.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 69 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,206 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00069 $0.01206
Opus 5.5 $0.00028 $0.00482
Sonnet 5.5 $0.00014 $0.00241
Haiku 4.5 $0.00007 $0.00121

Measured 1mo ago against content hash a332fb274a49, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-workflow scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/research_workflow/research_workflow_entry.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/research-workflow/SKILL.md · 139 lines

How it starts

The opening of the file, as written. The whole thing — 139 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research Workflow Entry

Use this as the single entry for local research workflow orchestration. Route to file-based skills and their obsidian-vault/ outputs.

It does not replace underlying skills. It routes to them with a clear stage model.

Stage model

KB build chain:

  • collect / import local PDFs → download when needed → analyze → (optional build)
  • note: there is no dedicated library-sync skill. If the user already has PDFs, ask for the PDF folder path and register/copy them into the local vault layout.

KB usage chain:

  • query (including comparison requests) → ideate → focus → review

Support chain:

  • audit / export / code-context

Purpose

  • Provide one understandable entry point for the full workflow.
  • Support both:
    • step-by-step execution (specify a stage)
    • end-to-end guidance (auto-detect next stage)
  • Clarify each stage's input/output contract.
  • Avoid overlap: orchestration here, execution in existing stage skills.

Stage mapping (reuse existing skills)

  • import local PDFs
    • Ask the user for the PDF folder path, category/sort hint, and venue/year hint. Use the local vault layout and paper_list.csv convention.
    • External libraries such as resmax are imported through an adapter/migration step. Keep their roots explicit; do not add repository-specific defaults to the core analysis runner.
  • collect
    • papers-collect-from-web
    • papers-collect-from-github-repo
  • download
    • papers-download-from-list
  • analyze
    • default route: scripts/run_local_paper_analysis.py formal analysis chain (MinerU parse/reuse → chunk anchor extraction → main analysis JSON → section writers → DeepSeek figure/table placement review → vault export and validation)
    • batch queue route: scripts/run_paper_list_analysis.py --state Downloaded writes per-row results under obsidian-vault/batches/<run_id>/ and leaves paper_list.csv unchanged until reviewed consolidation.
    • note: after analyze, you can go directly to query; run build only if you need refreshed indexes
  • build
    • papers-build-index (refreshes both obsidian-vault/index/index.jsonl for agents and Obsidian navigation pages)
  • query
    • papers-query-knowledge-base (also handles comparison and code-context requests)
  • ideate
    • research-brainstorm-from-kb
  • focus
    • idea-focus-coach (can be used independently; does not depend on ideate output)
  • review
    • reviewer-stress-test (can be used independently; does not depend on focus output)
  • audit
    • papers-audit-metadata-consistency
  • export
    • notes-export-share-version

Read the full file on GitHub · 139 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 139 lines · 69 tokens per session scan A a332fb274a49

Subscribe to this mod's changes

research-workflow is a skill published in the GitHub repository RipeMangoBox/BITE (62 stars, last pushed 2mo ago), licensed MIT. It adds 69 tokens to every session and 1,206 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

llm-wiki

Explain and apply the foundational LLM Wiki architecture and knowledge-management strategy. Use for setup, architecture, schema, or organization decisions; operational ingest/query/lint work uses dedicated skills.

Ar9av/obsidian-wiki · 41 tokens

wiki-lint

Audit wiki health: broken links, orphans, contradictions, stale content, lifecycle and tag issues. Use for maintenance or health checks. Default is report-only; use wiki-dedup for page-identity merges.

Ar9av/obsidian-wiki · 47 tokens

wiki-export

Export the Obsidian wiki graph to JSON, GraphML, Neo4j Cypher, Postgres/SQL, HTML, or OKF bundles. Use when transferring or visualizing wiki data in external tools; wiki-import handles the reverse direction.

Ar9av/obsidian-wiki · 53 tokens

wiki-status

Report wiki ingestion/completeness state, pending source delta, structural insights, or maintenance equilibrium. Use for remaining-work/status questions, hubs and bridges, or whether maintenance skills still have pending changes. wiki-digest summarizes learned knowledge instead.

Ar9av/obsidian-wiki · 50 tokens

wiki-query

Search and synthesize answers from the compiled Obsidian wiki, including cited and multi-hop answers. Use for questions about existing wiki knowledge or fast index-only lookups, and for challenge requests ("challenge this", "argue against X", "poke holes in my plan") that look for the vault's own evidence against a…

Ar9av/obsidian-wiki · 89 tokens

wiki-import

Import a wiki graph into the current vault from graph.json or an OKF/markdown bundle. Use for transferring previously exported wiki content between vaults; pair with wiki-export for the reverse direction.

Ar9av/obsidian-wiki · 42 tokens