Skill Claude CodeCodex
Grant and challenge proposal support for radiology and medical AI projects. Structures significance, innovation, approach, milestones, and consortium roles while keeping claims evidence-based and executable.
Skill Claude CodeCodex
Detect and remove AI writing patterns from academic manuscripts and response-to-reviewers letters. Scans for 27 common AI-generated text patterns and rewrites flagged passages to sound naturally human-written while preserving technical accuracy, bounding how much of the text a rewrite is allowed to touch.
Skill Claude CodeCodex
Intake and normalize a new radiology research project. Classifies project type, summarizes current state, identifies missing inputs, recommends next steps, and scaffolds lightweight project memory files.
Skill Claude CodeCodex
Sync research references from .bib files to Zotero library + Obsidian literature notes. Extract cross-cutting concept notes when enough literature accumulates. Works after /search-lit or standalone.
Skill Claude CodeCodex
Meta-analysis topic discovery and feasibility assessment. Professor-first (profile → gap) or Topic-first (question → gap → co-author). Pre-protocol phase from idea to ranked topic list.
Skill Claude CodeCodex
Generate publication-ready figures and visual abstracts for medical research papers. Supports ROC curves, forest plots, CONSORT/STARD/PRISMA flow diagrams, calibration plots, Kaplan-Meier curves, Bland-Altman plots, confusion matrices, pipeline diagrams, and journal-specific visual/graphical abstracts (python-pptx…
Skill Claude CodeCodex
Research project management for medical manuscripts. Scaffold project structure, track writing progress across phases, maintain project memory files, generate submission checklists and backwards timelines. Commands: init, status, sync-memory, checklist, timeline.
Skill Claude CodeCodex
Cross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL pandoc rendering, manuscript ↔ DOCX cross-reference QC, marker conversion ([N] ↔ [@key]), and native Zotero CWYW field-code injection. Replaces the inline reference-handling that previously lived in…
Skill Claude CodeCodex
Systematic review and meta-analysis pipeline for medical research. Covers protocol registration (PROSPERO), search strategy, screening, data extraction, risk of bias assessment (QUADAS-2/ROBINS-I), statistical synthesis (bivariate/HSROC for DTA, random-effects for intervention), and PRISMA-compliant reporting.…
Skill Claude CodeCodex
Design or audit a model-agnostic evaluation harness for an LLM or multimodal LLM on a clinical task (radiology report generation, visual question answering, clinical text extraction/classification) — the adjudicated reference standard, clinical-efficacy metrics (RadGraph-F1 / CheXbert-F1 beyond BLEU/ROUGE)…
Skill Claude CodeCodex
Generate the documentation an engineer-built medical-imaging model must carry — a Model Card (Mitchell et al. 2019), a Datasheet for its dataset (Gebru et al. 2021), and a METRIC-informed data-quality pass — filled from user-supplied facts, then verify every required section is present and non-empty before the card…
Skill Claude CodeCodex
Compute and report task-correct held-out metrics for a trained medical-imaging model — segmentation (Dice plus a boundary metric such as HD95 or NSD, per structure), classification (AUROC plus AUPRC and sensitivity/specificity with bootstrap CIs at the deployment prevalence), detection (FROC or mAP with a stated IoU…
Skill Claude CodeCodex
Generate a reproducible, runnable PyTorch training repo for a medical-imaging task — segmentation, classification, detection, image-to-image synthesis, self-supervised pretraining, or fine-tuning a pretrained backbone (transfer learning) — the missing middle link between choosing an architecture and validating a…
Skill Claude CodeCodex
Vet the concrete third-party model a study will be built on — this repository, this revision, this checkpoint — not the architecture family. Records a model dossier (source and version pin, licence and the file it was read from, intended use, pretrained-weight provenance, model task vs study task, reported validation…
Skill Claude CodeCodex
Design or audit the clinical-validation study for an engineer-built medical-imaging model (segmentation, classification, or detection) before the validation report or manuscript is written. Covers patient-level split disjointness and the data-leakage taxonomy, tuning-on-test, internal versus genuine external…
Skill Claude CodeCodex
Turn a folder of research PDFs into an Obsidian knowledge vault — consistently formatted literature notes with frontmatter, PDF embed links, and cross-referenced atomic concept notes. Use whenever the user wants PDFs converted to Obsidian notes, a batch of papers summarized into a common template, a research "second…
Skill Claude CodeCodex
General-purpose research orchestrator. Routes ambiguous or multi-step requests to the right skill(s) from the medsci-skills bundle. Use when the user describes a research goal without naming a specific skill, or when a task spans multiple skills.
Skill Claude CodeCodex
Peer review assistant for medical journals. Generates structured review drafts with journal-specific formatting. Constructive developmental tone with systematic manuscript analysis.
Skill Claude CodeCodex
Academic English consistency linting and non-native (ESL) language polish for medical manuscripts. Deterministically flags abbreviation define-once violations, US/UK spelling drift, hyphen-vs-en-dash numeric ranges, P/p case, hyphenation variants, small-number style, and value/unit spacing, then guides a style-only…
Skill Claude CodeCodex
Design or audit the data-preparation stage of a medical-imaging model — DICOM/NIfTI intake, resampling and intensity normalisation, and the augmentation plan — so the pipeline is leakage-safe before model-scaffold builds the training repo. Emits a declarative preprocessing manifest and a deterministic data-stage…
Skill Claude CodeCodex
Academic presentation preparation — paper-driven (journal club, grand rounds, seminar) and lecture/teaching decks (course material, workshop slides, conference talks). Analyzes source material, finds supporting references, drafts audience-adapted speaker scripts, generates or augments PPTX with speaker notes, and…
Skill Claude CodeCodex
Profile a medical-imaging dataset before any modelling decision is made — the acquisition grid, voxel spacing and orientation spread, the intensity domain, which label values are actually present, how much of the volume the target occupies, and how large the target is in millilitres — then gate that profile against…
Skill Claude CodeCodex
Convert a personal agent skill into a distributable, open-source-ready skill. Runs PII audit, generalization, license compatibility check, cross-platform adapter review, and packaging workflow.
Skill Claude CodeCodex
Produce or audit a radiomics / tabular clinical-ML study — imaging or clinical features → any classical learner (penalised logistic [LASSO / ridge / elastic-net], SVM, k-NN, naive Bayes, LDA/QDA, decision tree, random forest, gradient boosting [XGBoost / LightGBM / CatBoost], shallow MLP, stacked ensembles) → a…