Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add Aperivue/medsci-skills --skill intake-projectgit clone --depth 1 https://github.com/Aperivue/medsci-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/aperivue/medsci-skills/intake-project)<a href="https://agentmods.dev/skills/aperivue/medsci-skills/intake-project"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/intake-project/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/intake-project"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/intake-project.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 1 finding, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium Excessive Agency · line 263 Skill enables autonomous high-impact decisions without human-in-the-loop verification. Critical operations (destructive commands, financial transactions, data deletion) should require explicit user confirmation.Fix: Add human-in-the-loop confirmation for destructive, irreversible, or high-impact operations. Never auto-execute commands that modify files, send data, or alter system state.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00040 | $0.01932 |
| Opus 5 | $0.00020 | $0.00966 |
| Sonnet 5 | $0.00008 | $0.00386 |
| Haiku 4.5 | $0.00004 | $0.00193 |
Grade A, and why
intake-project scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 265 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Intake-Project Skill
Purpose
This skill is the front door for a new or messy project. It converts a folder, document bundle, or mixed set of notes into a structured project state that other skills can use safely.
Use this skill when:
- a new paper or proposal folder has been created
- an older folder exists but is poorly organized
- the user asks "what is this project and what should I do next?"
- another skill needs a reliable project summary before proceeding
Communication Rules
- Communicate with the user in their preferred language.
- Keep project labels and file names in the language already used by the workspace.
- Use English for manuscript section names, study design names, and medical/statistical terminology.
Inputs
Accept any of the following:
- a project folder
- a manuscript draft
- an abstract or proposal
- tables/figures plus notes
- a mixed folder with PDFs, drafts, and analyses
If information is incomplete, infer cautiously from file names and contents, then label uncertain items clearly.
Core Tasks
1. Project classification
Determine:
- project type:
original | review | meta-analysis | case report | technical note | grant | peer review | challenge | career-doc - primary domain:
radiology | medical AI | multimodal LLM | intervention | survival/prognostic | diagnostic accuracy | workflow - target output:
paper | abstract | grant | review | rebuttal | CV - likely target journal or venue, if recoverable
2. State reconstruction
Identify:
- what already exists
- what is missing
- current phase
- blocking dependencies
3. Project memory scaffold
If missing, propose or create lightweight anchor files:
PROJECT.mdSTATUS.mdCLAIMS.mdDATA_DICTIONARY.mdANALYSIS_PLAN.mdREVIEW_LOG.md
Create only files that are justified by the project type.
4. Action plan
Produce the next 3-5 actions in dependency order.
Canonical Manuscript Folder Structure
For any manuscript project (cohort, MA, RCT, case series), enforce this structure when scaffolding or reorganizing. Map every new artifact into one of these slots — do not invent ad-hoc folders.
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 10d ago First seen · 265 lines · 40 tokens per session scan A c65caf5bcdc5
intake-project is a skill published in the GitHub repository Aperivue/medsci-skills (291 stars, last pushed 2d ago), licensed MIT. It adds 40 tokens to every session and 1,932 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
clinical-trials-search
Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
shidi
A Chinese-language research assistant role that turns a user’s ideas into literature reviews, experiment plans, figures and organised data.
bioinformatics-project
Structure reproducible bioinformatics projects with canonical layouts, restartable drivers, pinned environments, provenance, and lab notebooks. Use when starting or reorganizing a genomics project or making a sequencing analysis rerunnable.
clinical-research
Use when designing a prospective clinical study before submission — selecting and classifying endpoints (primary / key-secondary / exploratory, with surrogate-endpoint flagging), estimating sample size and power for two-arm designs (means / proportions / survival), or scoring a study plan for feasibility and a GO /…
matlab-project
Use this skill for any work involving a MATLAB Project (.prj file) — creating a new project, tracking files, managing the project path, configuring Simulink cache and code-generation folders, running project health checks, or writing build scripts that keep the project in sync with the file system. Trigger phrases…
sr-search-record
An automated literature-review search and screening workflow using OpenAlex, an open database and API for scholarly research, and Zotero, a reference manager.