Skill Claude CodeCodex ✓ vendor
Pipeline skill for multi-omics data processing and integration. Use when the user asks to map gene IDs between HGNC Ensembl and UniProt, convert between omic data formats, run batch correction with ComBat or ComBat-seq, perform GSEA or over-representation analysis on multi-omic results, run consensus clustering on…
Skill Claude CodeCodex ✓ vendor
NGS quality control pipeline for short-read sequencing data. Triggers on FastQC, QC, quality control, adapter trimming, coverage, mosdepth, Picard metrics, fastp, MultiQC, sequencing QC, BAM QC, WGS/WES coverage analysis.
Skill Claude CodeCodex ✓ vendor
Reasoning skill for prior authorization clinical policy evaluation. Use when the user asks about payer clinical criteria, step therapy requirements, medical necessity definitions, CMS LCD/NCD coverage rules, appeals documentation strategy, formulary tier implications, or FHIR Da Vinci PAS implementation guidance.…
Skill Claude CodeCodex ✓ vendor
Pipeline skill for automating prior authorization decision workflows. Use when the user asks to parse PA request data (X12 278 or FHIR PAS bundles), extract clinical features for adjudication, build rules-based PA decision engines, train ML classifiers on historical PA decisions, analyze denial patterns, or generate…
Skill Claude CodeCodex ✓ vendor
Reason about pharmacoepidemiologic study design for causal inference from real-world data — choosing active comparator new-user designs, emulating target trials, avoiding immortal time bias, handling time-varying confounding with marginal structural models, and selecting propensity score methods. Use when the user…
Skill Claude CodeCodex ✓ vendor
Pipeline skill for protein structure analysis covering PDB/mmCIF parsing, RMSD superposition, Ramachandran/dihedral analysis, binding pocket detection, contact maps, B-factor flexibility, DSSP secondary structure, and format conversion. Triggers on PDB, protein structure, RMSD, Ramachandran, binding pocket, Biopython…
Skill Claude CodeCodex ✓ vendor
Reasoning skill for healthcare revenue cycle denial management. Use when the user needs to appeal a claim denial, draft a payer-ready denial appeal letter, analyze a denial reason code, or determine whether a denied claim should be overturned, pended, or accepted. Triggers include "appeal a claim denial", "draft…
Skill Claude CodeCodex ✓ vendor
Pipeline skill for computing HEDIS quality measures from claims and clinical data. Use when the user asks to calculate HEDIS measure rates, check continuous enrollment, build denominator/numerator logic, detect care gaps, compute utilization rates, identify high-cost claimants, or score risk stratification indices.…
Skill Claude CodeCodex ✓ vendor
Reason about quantitative proteomics experiment design and data analysis strategy. Use when the user asks to choose between LFQ, TMT, and DIA quantification; select an imputation method for missing values; pick a normalization strategy; interpret differential expression results from proteomics data; evaluate ratio…
Skill Claude CodeCodex ✓ vendor
Structural MRI/CT preprocessing pipeline for radiology workflows covering skull stripping, bias field correction, registration, and intensity normalization. Triggers on skull stripping, bias correction, registration, ANTs, FSL, HD-BET, N4, brain extraction, normalization, FLIRT, FNIRT, SyN, fslreorient2std, MNI…
Skill Claude CodeCodex ✓ vendor
Reasoning skill for CMS-HCC risk adjustment strategy and methodology. Use when the user asks about CMS-HCC model versions V24 or V28, blended transition methodology, ICD-10-to-HCC mapping logic, disease interaction hierarchies, RAF score methodology, risk adjustment factor calculation, coding gap identification…
Skill Claude CodeCodex ✓ vendor
Pipeline skill for CMS-HCC risk adjustment calculation and coding gap identification. Use when the user asks to apply the ICD-10-to-HCC crosswalk, calculate RAF scores, resolve disease hierarchies programmatically, identify coding gaps from Rx or lab proxies, project member-level risk scores, build a risk adjustment…
Skill Claude CodeCodex ✓ vendor
Reasoning skill for clinical risk stratification index selection and interpretation. Use when the user asks about LACE scores, Charlson Comorbidity Index, Elixhauser Index, readmission risk scoring, comorbidity weighting, SDOH Z-codes, Area Deprivation Index, or population health stratification methods.
Skill Claude CodeCodex ✓ vendor
Bulk RNA-seq analysis pipeline covering alignment (STAR), quantification (Salmon, featureCounts), and differential expression (DESeq2). Triggers on RNA-seq, STAR, Salmon, DESeq2, differential expression, gene expression, tximport, featureCounts, transcriptomics, "bulk RNA-seq", "STAR alignment", "Salmon…
Skill Claude CodeCodex ✓ vendor
Real-world data cohort analysis pipeline for claims and EHR data — cohort identification with ICD-10, NDC, and CPT codes, medication adherence metrics (PDC/MPR), propensity score estimation and balance diagnostics, Kaplan-Meier survival curves, and Cox proportional hazards models. Use when the user mentions claims…
Skill Claude CodeCodex ✓ vendor
Scanpy-based single-cell RNA-seq analysis pipeline covering loading (10X, h5ad), QC, normalization, HVG selection, PCA/UMAP, Leiden clustering, differential expression, and batch correction (Harmony, scVI). Use when the user mentions single-cell, scRNA-seq, Scanpy, AnnData, UMAP, clustering, 10X, h5ad, leiden, highly…
Skill Claude CodeCodex ✓ vendor
Reasoning skill for structure-based drug design strategy. Use when the user asks to assess target druggability, choose a docking strategy, select a scoring function, define a binding site, interpret docking results, plan molecular dynamics or free energy perturbation (FEP), design a virtual screening cascade, or…
Skill Claude CodeCodex ✓ vendor
Single-cell trajectory inference pipeline covering diffusion pseudotime (DPT), PAGA, RNA velocity with scVelo, and fate mapping with CellRank. Use when the user mentions pseudotime, trajectory, lineage, differentiation, RNA velocity, scVelo, CellRank, PAGA, diffusion map, fate probabilities, terminal states…
Skill Claude CodeCodex ✓ vendor
Reason about translational research problems in HCLS — especially neurology and hypothesis validation. Use when the user asks to design a validation study, evaluate a target, qualify a biomarker, choose endpoints, critique a preclinical-to-clinical plan, pick a trial design (basket/umbrella/platform), plan multimodal…
Skill Claude CodeCodex ✓ vendor
Germline and somatic short-variant calling pipeline for Illumina short-read data. Use when the user mentions BWA, BWA-MEM2, GATK, HaplotypeCaller, Mutect2, VCF, GVCF, VQSR, variant calling, germline, somatic, SNV, or indel calling from FASTQ/BAM.
Plugin Claude Code ✓ vendor
Bundles 9 skills, 6 agents, 1 hook, 4 MCP servers · 2,697 tokens together
Personalized AWS guidance built on patterns from 350,000+ startups—architecture, cost, security, and migration, from day-one account setup to production-ready infrastructure. Migrate to AWS from GCP or Heroku—including your entire AI stack: OpenAI/Gemini/Anthropic SDK rewrites to Amazon Bedrock, agentic systems…
Plugin Claude Code ✓ vendor
Bundles 2 skills · 364 tokens together
Technical AWS solutions for the problems startups get stuck on, from the AWS Startups Solution Architecture team. Multi-tenant SaaS isolation enforced in IAM rather than application code, and running a judgment agent such as an LLM reviewer inside a CI path. Startup here means the technical constraints are startup…
awslabs/amazon-datazone-mcp-server
MCP server Claude CodeCodexCursor +2 ✓ vendor
MCP server for AWS DataZone service - enables LLMs to interact with DataZone for data governance, cataloging, and management. Runs locally from the amazon-datazone-mcp-server Python package.
MCP server Claude CodeCodexCursor ✓ vendor
An AWS Labs Model Context Protocol (MCP) server for sraverify. Runs locally from the sraverify-mcp Python package.
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