BioTender-max

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

A step for finding biology datasets and matching them to a research task.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Skill "bio-figure-design" from BioTender-max/awesome-bio-agent-skills, covering bio-figure-design, purpose, input format, workflow and step 6.1: design figure 1.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Phase 2.6: Human review checkpoint (人类反馈验证).

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Skill "bio-innovation-check" from BioTender-max/awesome-bio-agent-skills, covering bio-innovation-check, purpose, input format, workflow and step 1.1: topic expansion.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

End-to-end pipeline from structured research input to a full manuscript plan (一条龙 Pipeline).

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Refine loop: three-reviewer iterative refinement (三审稿人迭代优化).

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Skill "bio-manuscript-text" from BioTender-max/awesome-bio-agent-skills, covering bio-manuscript-text, purpose, input format, workflow and step 7.1: write the introduction.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

A step for designing the system of measures used to evaluate a biology study or its results.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Skill "bio-ppt-generate" from BioTender-max/awesome-bio-agent-skills, covering bio-ppt-generate, purpose, input format, suggested slide order and output format.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Skill "bio-task-system" from BioTender-max/awesome-bio-agent-skills, covering bio-task-system, purpose, input format, workflow and step 2.1: task taxonomy search.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Biology research tools reference. Always available inside agent containers.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Run BLAST sequence similarity searches. Use when the user asks to BLAST a sequence, find similar sequences, identify a gene/protein, or do homology search. Triggers on "blast", "sequence similarity", "homology", "identify sequence".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

ChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Bulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query AlphaFold protein structure predictions. Use when user asks about protein structure, 3D structure, protein folding, or structure prediction. Triggers on "alphafold", "protein structure", "3D structure", "folding", "pLDDT", "structure prediction".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query ClinVar for clinical variant significance. Use when user asks about variant pathogenicity, genetic variants, clinical significance, or disease-causing mutations. Triggers on "clinvar", "pathogenic", "variant significance", "clinical significance", "disease variant", "mutation pathogenicity".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query Ensembl for genomic data. Use when user asks about gene coordinates, genomic sequences, variants, gene structure, exons, transcripts, or species comparison. Triggers on "ensembl", "gene coordinates", "genomic location", "exon", "transcript", "variant location", "rsid", "rs number".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query NCBI GEO for gene expression datasets. Use when user asks about RNA-seq datasets, microarray data, expression data, GEO accessions, or finding public datasets. Triggers on "geo", "gene expression omnibus", "expression dataset", "RNA-seq dataset", "microarray dataset", "GSE", "GDS".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query InterPro for protein domains and families. Use when user asks about protein domains, functional sites, protein families, domain architecture, or motifs. Triggers on "interpro", "protein domain", "domain architecture", "protein family", "functional site", "motif".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query KEGG for biological pathways and gene info. Use when user asks about metabolic pathways, signaling pathways, pathway genes, or KEGG IDs. Triggers on "kegg", "pathway", "metabolic pathway", "signaling pathway", "pathway genes".

BioTender-max/awesome-bio-agent-skills

Skill Claude CodeCodex

Query OpenTargets for drug targets, disease associations, and therapeutic evidence. Use when user asks about drug targets, disease mechanisms, target validation, or drug-disease associations. Triggers on "opentarget", "drug target", "target validation", "disease association", "therapeutic target", "drug for disease".