BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for retrieving public omics datasets, sequences, annotations, and literature-linked biological resources.
not rated 202
+2 3mo ago A 21 tokens
ehr-analysis
74BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.
not rated 202
+2 3mo ago A 33 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
End-to-end protein design pipeline guide across preparation, generation, validation, and filtering. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple…
not rated 202
+2 3mo ago A 98 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.
not rated 202
+2 3mo ago A 27 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
ESM2 protein language model for sequence scoring, embeddings, and plausibility checks. Use this skill when: (1) Computing pseudo-log-likelihood (PLL) scores, (2) Getting protein embeddings for clustering, (3) Filtering designs by sequence plausibility, (4) Zero-shot variant effect prediction, (5) Analyzing…
not rated 202
+2 3mo ago A 111 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.
not rated 202
+2 3mo ago A 25 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.
not rated 202
+2 3mo ago A 23 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.
not rated 202
+2 3mo ago A 35 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.
not rated 202
+2 3mo ago A 30 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for predictive modeling, biomarker discovery, survival modeling, and explainability over omics-derived features.
not rated 202
+2 3mo ago A 27 tokens
metabolomics
84BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.
not rated 202
+2 3mo ago A 31 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for integrating matched or partially matched omics layers into shared latent structure and cross-modal interpretation.
not rated 202
+2 3mo ago A 25 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
not rated 202
+2 3mo ago A 27 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for enrichment testing, ranked-gene analysis, pathway scoring, and pathway-focused visualization across omics outputs.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for haplotype phasing, genotype imputation, reference-panel matching, and imputation QC.
not rated 202
+2 3mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Protein design quality control, filtering thresholds, and ranking guidance. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating…
not rated 202
+2 3mo ago A 143 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Proteina-Complexa flow-based protein backbone generation with fold-conditioned sampling guidance. Use this skill when: (1) Generating de novo protein backbones with hierarchical fold conditioning, (2) Exploring long-chain backbone generation beyond standard diffusion baselines, (3) Using NVIDIA Proteina-style flow…
not rated 202
+2 3mo ago A 163 tokens
read-qc
94BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.
not rated 202
+2 3mo ago A 21 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for packaging analysis outputs into reproducible reports, clean tables, and publication-ready figure exports.
not rated 202
+2 3mo ago A 26 tokens
ribo-seq
96BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.
not rated 202
+2 3mo ago A 29 tokens
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: