CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Unified framework for spatial omics data in Python. Use for integrating multiple spatial modalities and formats. Part of the scverse ecosystem.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Spatial omics analysis in Python. Use for spatial transcriptomics (Visium, Xenium, MERFISH), spatial clustering, neighborhood analysis, and visualization.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Stereo-seq (Spatially Resolved Transcriptomics) data analysis. High-resolution spatial transcriptomics from BGI/MGI using DNA nanoball (DNB) technology.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
10X Visium spatial transcriptomics data analysis. Use for tissue spatial gene expression profiling. For Python use squidpy; for R use Giotto or Seurat.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Visual integration tool for exploration of spatial single-cell data. Use for creating interactive visualizations and dashboards for multi-modal and spatial omics data.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Workflow management for computational biology. Use for creating portable and reproducible pipelines with excellent support for cloud and HPC environments.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex needs its repo
Workflow management system for bioinformatics. Use for creating reproducible and scalable computational biology pipelines.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Create new skills, modify and improve existing skills, and measure skill performance. Use when users want to create a skill from scratch, update or optimize an existing skill, run evals to test a skill, benchmark skill performance with variance analysis, or optimize a skill's description for better triggering accuracy.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use this skill when the user wants to use Skill Seekers to turn documentation sites, GitHub repositories, local codebases, PDFs, videos, notebooks, wikis, or other knowledge sources into AI-ready outputs such as Claude skills, OpenAI/Gemini assets, RAG documents, vector database payloads, or IDE rule files. Also use…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use Bitwarden CLI (bw) for headless secret retrieval. Install via npm, authenticate silently with --passwordenv, read vault items without interactive prompts.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Audits Python libraries for security issues using Bandit, pip-audit, secrets scanning, CI checks, and secure coding patterns. Use this skill whenever a user asks for a Python security review, dependency vulnerability scan, secret detection, hardening against injection and deserialization bugs, or wants security checks…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision docs, or similar structured content. This workflow helps users efficiently transfer context, refine content through iteration, and verify the doc works for readers.…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
A set of resources to help me write all kinds of internal communications, using the formats that my company likes to use. Claude should use this skill whenever asked to write some sort of internal communications (status reports, leadership updates, 3P updates, company newsletters, FAQs, incident reports, project…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users request creating art using code, generative art, algorithmic art, flow fields, or particle systems. Create original algorithmic art rather than copying existing artists' work to avoid copyright…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Applies Anthropic's official brand colors and typography to any sort of artifact that may benefit from having Anthropic's look-and-feel. Use it when brand colors or style guidelines, visual formatting, or company design standards apply.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Create beautiful visual art in .png and .pdf documents using design philosophy. You should use this skill when the user asks to create a poster, piece of art, design, or other static piece. Create original visual designs, never copying existing artists' work to avoid copyright violations.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Create distinctive, production-grade frontend interfaces with high design quality. Use this skill when the user asks to build web components, pages, artifacts, posters, or applications (examples include websites, landing pages, dashboards, React components, HTML/CSS layouts, or when styling/beautifying any web UI).…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Toolkit for styling artifacts with a theme. These artifacts can be slides, docs, reportings, HTML landing pages, etc. There are 10 pre-set themes with colors/fonts that you can apply to any artifact that has been creating, or can generate a new theme on-the-fly.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Suite of tools for creating elaborate, multi-component claude.ai HTML artifacts using modern frontend web technologies (React, Tailwind CSS, shadcn/ui). Use for complex artifacts requiring state management, routing, or shadcn/ui components - not for simple single-file HTML/JSX artifacts.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying…
CHENyiru3/AI-Skills-Collections
Skill Claude CodeCodex
Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: