Skill Claude CodeCodex
Query public biology databases and APIs including UniProt, RCSB PDB, AlphaFold DB, ClinVar, dbSNP, gnomAD, Ensembl, GEO, InterPro, KEGG, OpenTargets, Reactome, and STRING. Use when the user asks to look up protein annotations, structures, variants, population frequencies, pathway knowledge, public datasets…
Skill Claude CodeCodex
Bioinformatics workflow guide for sequence analysis, QC, plotting, structure rendering, and literature search.
Skill Claude CodeCodex
Drug-discovery knowledge-graph workflow guide for assembling drug-target-disease-pathway relationship graphs from OpenTargets GraphQL, ChEMBL REST, STRING PPI, and Reactome pathway APIs, then running hub detection, shortest-path queries, and neighborhood expansion with networkx. Use when the user asks to build, query…
Skill Claude CodeCodex
Research-literature workflow guide for evidence-matrix assembly, citation-table normalization, structured review synthesis, and research-gap mapping. Use when the user asks for systematic or scoped literature review workflows, citation cleanup, evidence tables, or manuscript-ready review preparation for drug-discovery…
Skill Claude CodeCodex
Omics and single-cell workflow guide for AnnData, Scanpy-style dataset profiling, PyDESeq2-oriented count checks, pysam alignment inspection, and pyOpenMS mass-spectrometry summaries. Use when the user asks to inspect h5ad files, summarize BAM regions, profile omics count tables, or inventory mzML experiments before…
Skill Claude CodeCodex
Drug-patent landscape workflow guide for searching US patents via the PatentsView API, classifying pharmaceutical claim types (NCE, formulation, method-of-use, polymorph, combination, biologic, process), grouping by patent family and assignee, estimating expiry timelines, and cross-referencing the FDA Orange Book for…
Skill Claude CodeCodex
Scientific visualization workflow guide for publication-ready static figures with seaborn or matplotlib and interactive figures with Plotly. Use when the user asks for scientific plots, cohort or assay figures, publication graphics, dashboards, or reusable plotting scripts for research datasets.
Skill Claude CodeCodex
Research-method workflow guide for hypothesis framing, peer-review style critique, reproducibility planning, study-design checks, and scientific-writing structure. Use when the user asks for manuscript critique, research-gap framing, hypothesis generation, reproducibility checklists, or study-planning support that…
Skill Claude CodeCodex
Statistical modeling workflow guide for hypothesis tests, effect-size reporting, statsmodels regression, diagnostics, and structured result export. Use when the user asks for statistical test selection, OLS or logistic regression, coefficient tables, inference, or reproducible statistical summaries for scientific…
Skill Claude CodeCodex
Survival and time-to-event workflow guide for Kaplan-Meier summaries, log-rank tests, and Cox proportional hazards models with reproducible outputs. Use when the user asks for time-to-event analysis, censored data summaries, hazard ratios, or survival-group comparison for research datasets.