NeuroAIHub

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated pipeline and parameter guidance for event-related potential analysis, from preprocessing through statistical testing.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated pipeline guidance for EEG/MEG data analysis using MNE-Python: data loading, preprocessing (filtering, ICA, re-referencing), epoching, ERP/ERF computation, time-frequency decomposition, source localization, decoding/MVPA, statistical testing, simulation, and visualization. Use this skill whenever the…

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Advises on functional/effective connectivity methods: PPI, DCM, Granger causality, graph theory.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated guidance for fMRI General Linear Model specification: HRF modeling, design matrix construction, contrast definition, confound regression, and statistical inference.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated guidance for fMRI preprocessing decisions: motion correction, slice timing, spatial normalization, smoothing, confound regression, and quality control.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Guides fMRI task design: block vs. event-related vs. mixed; jittering; contrasts; power for BOLD detection.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Preprocess task-based or resting-state fMRI data with fMRIPrep — a robust, BIDS-App preprocessing pipeline built on FSL, ANTs, FreeSurfer, AFNI, and Nilearn. Use this skill whenever the user asks to preprocess fMRI/BOLD data, run fMRIPrep on a BIDS dataset, set up Docker/Singularity/Apptainer containers for fMRIPrep…

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated guidance for network neuroscience analysis using netneurotools: datasets, brain network metrics, connectivity consensus, modularity, spatial statistics, null models, and cortical surface visualization. Use this skill whenever the user works with brain connectivity matrices, connectomes, graph theory…

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated methods and decision logic for neural decoding, RSA, temporal generalization, and encoding models in systems neuroscience.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated guidance for cortical surface visualization and brain surface rendering of fMRI data using pycortex: data types (Volume, Vertex, Dataset), 2D cortical flatmaps, 3D WebGL brain viewers, volume-to-surface mapping, FreeSurfer/fMRIPrep integration, ROI management, and surface analysis. Use this skill…

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Guides ACT-R cognitive model construction: chunk types, production rules, subsymbolic parameters, and model validation.

NeuroAIHub/BrainPilot

Skill Claude CodeCodex

Domain-validated guidance for building hierarchical Bayesian cognitive models with Stan/PyMC: prior specification, model structure, MCMC diagnostics, and posterior predictive checks.