Skill Claude Code ✓ vendor
Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment. For local…
Skill Claude Code ✓ vendor
Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request…
Skill Claude Code ✓ vendor
Run RFDiffusion protein backbone design via NVIDIA NIM. Use for de novo protein backbones, motif scaffolding, binder design, hotspot residues, contigs syntax, diffusion steps, hosted NVIDIA API calls, local Docker deployment, and PDB backbone outputs for ProteinMPNN sequence design.
Skill Claude CodeCodex ✓ vendor
Use this skill to check or change this machine's NVIDIA display and GPU settings, such as resolution, refresh rate, V-Sync, G-SYNC, brightness, color, and GPU performance.
Skill Claude Code ✓ vendor
Customize NVIDIA Nemotron Voice Agent's Generic Pipecat example for healthcare appointment, five-field patient intake, or custom tool-calling workflows without a separate backend.
Skill Claude Code ✓ vendor
Use Boltz2 NIM for biomolecular structure prediction and binding affinity. Invoke for Boltz2, protein structures, protein-ligand/DNA/RNA complexes, SMILES or CCD ligands, pIC50/IC50 affinity scoring, mmCIF output, hosted NVIDIA API calls, or local Docker deployment.
Skill Claude Code ✓ vendor
NOTE: molecule and target inputs and your NGCAPIKEY are transmitted to external NVIDIA-hosted API endpoints on every call. Use local NIM containers for confidential or proprietary data. Run a complete computational drug discovery pipeline using NVIDIA BioNeMo NIMs: generate drug-like molecules with GenMol, dock them…
Skill Codex ✓ vendor
Validate coding-sequence CSVs, extract public CodonFM/Encodon embeddings, and choose checkpoints for downstream property modeling.
Skill Codex ✓ vendor
Fine-tune public CodonFM Encodon checkpoints on labeled coding-sequence or coding-variant data using LoRA, head-only, or full fine-tuning. Use when a user explicitly asks to fine-tune CodonFM or Encodon for regression or classification. Support generic public-v1 Encodon workflows only; reject Decodon, MissenseDataset…
Skill Codex ✓ vendor
Validate, prepare, or run public CodonFM Encodon masked-codon variant scoring and review compatibility of its scoring workflows. Use only when the user explicitly requests CodonFM or Encodon, or that context is already established in the conversation. Do not select this skill for a generic variant-scoring request…
Skill Codex ✓ vendor
Set up the public CodonFM v1 repository and download public Encodon checkpoints. Use for requests to build or launch the CodonFM development container, configure local data/checkpoint mounts, verify GPU access, or download public Encodon 80M, 600M, 1B, or Cdwt-1B weights. Do not use for Decodon, Encodon 5B/10B…
Skill Claude CodeCodex ✓ vendor
Plan NVIDIA Parabricks pbrun commands, translate CPU options and check runtime readiness. Use for individual tools, including planning-only questions.
Skill Claude CodeCodex ✓ vendor
Use when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU workflow outputs. Adds optional GPU steps in-place with runtime toggles (default off). Do NOT use for individual pbrun command routing — use…
Skill Claude Code ✓ vendor
Captures what an AI agent is supposed to do — its purpose, boundaries, and success criteria — as a durable snapshot for anyone building, evaluating, reviewing, or changing it. Explores the user's codebase and docs first, then asks one intent question at a time for what source cannot supply. Hands its answers to…
Skill Claude Code ✓ vendor
Entry point for an AI agent's ETHOS.md: a durable snapshot of what the agent is for, what it must not do, and what success looks like. Routes a request to explore and capture intent (ethos-explore), or write or edit the file (ethos-write). Owns the standard every ethos sub-flow follows. Use when the user asks "help me…
Skill Claude Code ✓ vendor
Writes an AI agent's ethos.md — a durable snapshot of its purpose, intended behavior, boundaries, and success criteria — from the answers gathered by ethos-explore. Renders the schema-v1 template, validates the front matter and required markdown sections, saves the file in the agent's repository, and reviews it with…
Skill Claude CodeCodex ✓ vendor
Detect and diagnose CUDA correctness bugs with NVIDIA Compute Sanitizer. Routes GPU memory errors, shared-memory data races, uninitialized-memory reads, and synchronization/barrier bugs to the right sub-tool (memcheck, racecheck, initcheck, synccheck) and explains how to build, run, and read the report. Use when…
Skill Claude CodeCodex ✓ vendor
Run RFD4-Proteina NIM for joint protein structure and sequence design, conditioned generation, and reward-guided search using the NVIDIA hosted API or a self-hosted NIM. Not for the older RFdiffusion contigs API.
Skill Claude CodeCodex ✓ vendor
Use when a concrete holoscan command in holoscan-applications or a standalone Module fails, hangs, regresses, or returns wrong output.
Skill Claude CodeCodex ✓ vendor
Develop external Holoscan Modules with the Holoscan CLI and use them in Holoscan applications: scaffold, test, Python bindings, DEB/WHEEL packaging, and clean-consumer proof.
Skill Claude Code needs its repo ✓ vendor
Agent runbook for evaluating an existing PDB directory through the separately installed first-party Proteina-Complexa CLI. Use to refold or score designs, compute interface pAE, ipLDDT, scRMSD, motif RMSD, or designability, run complexa analysis, or assess third-party BindCraft, AlphaProteo, or RFdiffusion outputs.…
Skill Claude Code needs its repo ✓ vendor
Agent runbook for Proteina-Complexa parameter sweeps through the separately installed first-party CLI and config generator. Use for cartesian-product hyperparameter scans, sweeper YAML authoring, configuration comparisons, ablations, tuning, success-rate ranking, or Pareto searches over quality and wall-clock cost. Do…
Skill Claude Code ✓ vendor
Add, edit, inspect, or validate Proteina-Complexa target definitions for protein binders, ligand binders, and AME motif scaffolding. Use for target registries, chain/residue selectors, hotspots, ligand fields, and incomplete motif inputs. Covers direct YAML edits and complexa target/validate target commands; running a…
Skill Claude CodeCodex ✓ vendor
Use when running the CDF AnomalyGen pipeline over a defect dataset — mask placement, fine-tuning, synthetic defect-image generation (SDG), evaluation, quality refinement, and pseudo-labeling — even when the user names only one stage.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: