Skill Claude CodeCodex
Comprehensive spatial statistics toolkit — cluster-level (neighborhood enrichment, Ripley, co-occurrence), gene-level (Moran's I, Geary's C, local Moran, Getis-Ord), and network-level analysis.
Skill Claude CodeCodex
Find genes with spatially variable expression patterns using Moran's I, SpatialDE, or FlashS.
Skill Claude CodeCodex
Python API skill for exploratory spatial biomarker discovery, target prioritization, drug annotation, and research-use evidence summaries.
Skill Claude CodeCodex
Python API skill for tertiary lymphoid structure detection, maturity typing, ecosystem analysis, and exploratory outcome association.
Skill Claude CodeCodex
Trajectory inference and pseudotime analysis for spatial transcriptomics data.
Skill Claude CodeCodex
Python API skill for cross-modal spatial translation, including histology-to-expression prediction and super-resolution helpers.
Skill Claude CodeCodex
RNA velocity and cellular dynamics analysis for spatial transcriptomics data.
Skill Claude CodeCodex
Generic visualization for spatial transcriptomics data — creates spatial feature maps, UMAP/PCA plots, and downstream result visualizations for domains, annotation, deconvolution, communication, statistics, trajectory, and integration.
Skill Claude CodeCodex
Python API skill for whole-slide image loading, tiling, feature extraction, and optional multiple-instance learning inference.