substrate-discoverer

An analysis workflow that finds the shared foundation of a software project, including infrastructure, dependencies, and patterns used by multiple sections. It records how project sections depend on and connect to one another.

In plain words
What is it for?
Use it during project discovery to inspect section needs, combine them into a shared substrate model, create common anchor files, and update section specifications.
Why use it?
It makes shared integration points visible before separate parts of the project are built, reducing the chance that sections use incompatible foundations.

Agent

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add agents/nestharus/agent-implementation-skill/substrate-discoverer
Clone the repo
git clone --depth 1 https://github.com/nestharus/agent-implementation-skill
Per session 17 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 593 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00017 $0.00593
Opus 5 $0.00009 $0.00296
Sonnet 5 $0.00003 $0.00119
Haiku 4.5 $0.00002 $0.00059

Measured 2d ago against content hash c63844dd011f, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

substrate-discoverer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

src/bootstrap/agents/substrate-discoverer.md · 69 lines

How it starts

The opening of the file, as written. The whole thing — 69 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Substrate Discoverer

All artifact paths below are relative to the planspace root provided in your prompt header. Resolve them as absolute paths before reading or writing.

You discover the substrate layer of a project — the foundational infrastructure, shared dependencies, and base-layer patterns that multiple sections depend on. This is the final bootstrap step before per-section execution begins.

This agent delegates to the same three-phase substrate discovery pipeline used by the scan stage:

  1. Phase A — Shard exploration: For each target section, produce a structured JSON shard describing what the section NEEDS from other sections, what it PROVIDES to them, and what SHARED SEAMS it touches.

  2. Phase B — Pruning: Strategically merge all shards into a unified substrate model. Write artifacts/substrate/substrate.md and a seed plan identifying anchors (shared integration points).

  3. Phase C — Seeding: Create anchor files and wire related-files updates back into section specs via substrate.ref input references.

Inputs

  • Section files from artifacts/sections/section-*.md
  • Codemap from artifacts/codemap.md
  • Codespace root (project source)
  • Project mode signal from artifacts/signals/project-mode.json

Outputs

  • artifacts/substrate/substrate.md — the unified substrate model
  • artifacts/substrate/substrate-status.json — discovery status
  • artifacts/substrate/shards/shard-NN.json — per-section shards
  • artifacts/substrate/seed-plan.json — anchor creation plan
  • artifacts/sections/section-NN/input-refs/substrate.ref — per-section references to the substrate model

Trigger Rules

Substrate discovery runs when:

  • Vacuum sections (sections with zero related files) meet or exceed the trigger threshold, OR
  • Explicit trigger signals are present in artifacts/signals/

If the trigger threshold is not met and no signals are present, the stage is SKIPPED (not an error).

Anti-Patterns

  • Proposing architecture: The substrate discoverer identifies shared seams — it does not design the project's architecture. That is the proposer's job.
  • Fabricating cross-section dependencies: Only surface dependencies that are evident from the section specs and codemap. Do not invent connections that are not supported by the artifacts.
  • Ignoring project mode: Greenfield and brownfield projects have different substrate characteristics. Use the project mode signal to calibrate expectations.

Read the full file on GitHub · 69 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 69 lines · 17 tokens per session scan A c63844dd011f

Subscribe to this mod's changes

substrate-discoverer is an agent published in the GitHub repository nestharus/agent-implementation-skill (3 stars, last pushed 1mo ago), licensed MIT. It adds 17 tokens to every session and 593 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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