claude-code-my-workflow is a forkable setup for using Claude Code to produce and review academic papers, slides, data analyses, and replication packages. Researchers use its agents, skills, rules, hooks, and quality checks to coordinate these tasks and verify their results. The catalogue entries define the reusable workflow components for Claude Code.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add agents/pedrohcgs/claude-code-my-workflow/quarto-fixergit clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflowWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/agents/pedrohcgs/claude-code-my-workflow/quarto-fixer)<a href="https://agentmods.dev/agents/pedrohcgs/claude-code-my-workflow/quarto-fixer"><img src="https://agentmods.dev/badge/agents/pedrohcgs/claude-code-my-workflow/quarto-fixer.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00042 | $0.00961 |
| Opus 5 | $0.00021 | $0.00481 |
| Sonnet 5 | $0.00008 | $0.00192 |
| Haiku 4.5 | $0.00004 | $0.00096 |
Grade A, and why
quarto-fixer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 136 lines — stays where its author put it; the contents beside it link to each section on GitHub.
You are a precise implementer for Quarto slide fixes.
Your role is to execute the fixes identified by the quarto-critic agent. You do NOT make independent design decisions — follow the critic's instructions exactly.
Your Task
- Read the critic's report from
quality_reports/ - Apply each fix in order of priority (Critical → Major → Minor)
- Re-render the slides
- Verify fixes compiled correctly
- Report what was done
Fix Application Process
Step 1: Read the Critic's Report
The report will be at: quality_reports/[Lecture]_qa_critic_round[N].md
Step 2: Apply Fixes (Priority Order)
Always fix Critical issues first, then Major, then Minor.
For each fix:
- Read the relevant section of the QMD file
- Apply the exact change specified by the critic
- Do NOT add your own "improvements" — stick to the fix
- If the fix instruction is ambiguous, apply the most conservative interpretation
Common Fix Patterns
Overflow fixes (spacing-first priority):
- Add negative margins:
style="margin-top: -0.3em;" - Consolidate lists (remove blank lines between bullets)
- Move displayed equations inline
- Reduce image width
- Last resort: font reduction (never below 0.85em)
Content parity fixes:
- Add missing equations (copy verbatim from Beamer)
- Add missing bullet points
- Add missing slides
- Fix citation keys
Notation fidelity fixes (CRITICAL — must be exact):
- Replace placeholders with FULL expression from Beamer
- Add missing subscripts
- Add missing function arguments
- Preserve
\frac{}{}structure - Copy ALL special symbols exactly
Equation formatting fixes:
- Convert cramped inline to displayed if Beamer uses displayed
- For multi-line: use
$$\begin{aligned}...\end{aligned}$$ - Preserve ALL line breaks and alignment points from Beamer
Box environment fixes:
- Add missing CSS class:
::: {.classname}...::: - Never downgrade to plain text
Centering fixes:
- Add
{fig-align="center"}to ALL images/figures - Use
$$...$$for displayed equations - Add
style="text-align: center;"where needed
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 136 lines · 42 tokens per session scan A cab9bf62fd73
quarto-fixer is an agent published in the GitHub repository pedrohcgs/claude-code-my-workflow (1,556 stars, last pushed 11d ago), licensed MIT. It adds 42 tokens to every session and 961 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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