ai4science-studio: Command for Claude Code

.claude/commands/run-matey.md

run-matey is a command for Claude Code from AMDResearch/ai4science-studio. It costs 0 tokens per session (730 once invoked), scanned A, original, MIT.

A guided workflow for training or using MATEY, a model that predicts how physical systems change over time, on AMD GPUs.

In plain words
What is it for?
Use it to train MATEY from HDF5 data or run an autoregressive rollout, which repeatedly predicts future states from an initial condition file.
Why use it?
It organizes choices for the dataset, container, GPU count, checkpoint, input file, and cluster job settings so the run can be started consistently.

Command for Claude Code

Written for Claude Code: $ARGUMENTS substitution.

This is AMDResearch/ai4science-studio's own configuration. It tells Claude Code how to work on ai4science-studio itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything ai4science-studio configures →

Reuse

Borrowing it

Nothing to install: this file belongs to AMDResearch/ai4science-studio. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/AMDResearch/ai4science-studio/main/.claude/commands/run-matey.md
Clone the repo
git clone --depth 1 https://github.com/AMDResearch/ai4science-studio

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for run-matey

README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for run-matey

Your own site · 80×15
<a href="https://agentmods.dev/commands/amdresearch/ai4science-studio/run-matey"><img src="https://agentmods.dev/badge/commands/amdresearch/ai4science-studio/run-matey.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 730 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.00730
Opus 5.5 $0.00000 $0.00292
Sonnet 5.5 $0.00000 $0.00146
Haiku 4.5 $0.00000 $0.00073

Measured 2mo ago against content hash 70b8722940bf, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

run-matey scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/commands/run-matey.md · 94 lines

How it starts

The opening of the file, as written. The whole thing — 94 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Run MATEY spatiotemporal modeling on an AMD cluster

Guide the user through training or inference with MATEY on AMD GPUs.

Step 0 — Cluster config check

Check if .cluster-config.yaml (repo root) or ~/.config/ai4science-studio/cluster.yaml exists. If neither exists, run the /init-cluster flow first. If a config exists, read it and pre-fill container runtime and SLURM partition/account from saved values.

Step 1 — Questionnaire

Q0. Task

  • Training — Train a MATEY model from scratch
  • Inference — Autoregressive rollout from a trained checkpoint

Q1. Container runtime

  • Apptainer (recommended for HPC — use build_sif.sh to create SIF + overlay)
  • Docker (simpler setup)

Q2. (Training) Dataset Do you have training data in HDF5 format? The JHTDB turbulence demo data is the default starting point.

Q3. (Training) Multi-GPU Single GPU or multi-GPU DDP? If multi-GPU, how many?

Q4. (Inference) Checkpoint path Full path to your trained .pt checkpoint?

Q5. (Inference) Input file Path to HDF5 initial condition file?

Q6. (SLURM) Partition and account How should I determine your SLURM partition and account/project?

  • Provide manually — type your partition and account names
  • Auto-discover — I will query SLURM to find available partitions and accounts on this cluster

Step 2 — Setup

Auto-discovery procedures

Run these when the user chose Auto-discover for any question. Present the results and let the user confirm or override.

SLURM partition and account (Q6):

sinfo -h -o "%P %G" | grep -i gpu
sacctmgr show associations where user=$USER format=account%30,partition%30 -n

Present the available GPU partitions and the user's associated accounts. If multiple exist, ask the user to pick.

After auto-discovery, always confirm the found values with the user before proceeding.


Docker

cd physics_simulation/models/MATEY/examples
./docker_run.sh train    # or: ./docker_run.sh inference

Read the full file on GitHub · 94 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 94 lines · 0 tokens per session scan A 70b8722940bf

Subscribe to this mod's changes

run-matey is a command published in the GitHub repository AMDResearch/ai4science-studio (4 stars, last pushed yesterday), licensed MIT. It costs nothing until one of its globs matches a file; then it loads 730 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

run-matey compared with commands from other repositories

run-matey next to 6 commands from other repositories
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