Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add commands/brain-bootstrap/claude-code-brain-bootstrap/mcpgit clone --depth 1 https://github.com/brain-bootstrap/claude-code-brain-bootstrapWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00018 | $0.00919 |
| Opus 5 | $0.00009 | $0.00460 |
| Sonnet 5 | $0.00004 | $0.00184 |
| Haiku 4.5 | $0.00002 | $0.00092 |
Grade B, and why
mcp scanned grade B with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Reads MCP configurationmediumAgent snooping
mcp.json carries server URLs and auth tokens; reading it lets a mod discover and abuse other integrations.
- **NEVER** hardcode API keys in `.mcp.json` — use env var placeholders like `"YOUR_API_KEY_HERE"` How it starts
The opening of the file, as written. The whole thing — 108 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Manage Model Context Protocol (MCP) servers for this project: $ARGUMENTS
ultrathink — use extended reasoning for MCP server selection and configuration.
MCP Tool Invocation Format
Once servers are configured in .mcp.json, invoke their tools using:
mcp__SERVER_KEY__TOOL_FUNCTION_NAME
Where SERVER_KEY is the key in .mcp.json under mcpServers.
Instructions
If $ARGUMENTS contains list or is empty:
- Read
.mcp.jsonto show currently configured servers - Show the invocation format for each tool
- Suggest additional servers based on the tech stack in
claude/architecture.md
If $ARGUMENTS contains add <server-name>:
- Check if the server name exists in the Smithery Registry:
https://registry.smithery.ai/servers/<name> - Add the server configuration to
.mcp.jsonundermcpServers - Update
.claude/settings.jsonto includeallowedToolspermissions for the new server - Update
CLAUDE.md— add a note to the Plugin Ecosystem or Critical Patterns section
If $ARGUMENTS contains status:
- Read
.mcp.json— list all configured servers with their connection type - Check which tools each server provides
- Verify
allowedToolsin.claude/settings.jsonis in sync with.mcp.json
If $ARGUMENTS contains format or invocations:
Show all available MCP tool invocations from the current .mcp.json:
mcp__SERVER_KEY__TOOL_NAME
Common MCP Servers by Project Type
Web / Frontend projects
github—mcp__github__create_pull_request,mcp__github__list_commitsweb-search—mcp__web-search__search(documentation lookup)filesystem—mcp__filesystem__read_file,mcp__filesystem__write_file
Backend / API projects
postgres—mcp__postgres__query(read-only DB access)github— PR management, issue trackingweb-search— API documentation, best practices
Data Science / ML projects
filesystem— data file accessweb-search— research papers, library docsdocuments— reading large datasets or PDFs
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 2d ago First seen · 108 lines · 18 tokens per session scan B 2603bf5ac257
mcp is a command published in the GitHub repository brain-bootstrap/claude-code-brain-bootstrap (11 stars, last pushed 4mo ago), licensed MIT. It adds 18 tokens to every session and 919 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it B with 1 finding (reads mcp configuration). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other commands, from other repositories
restart
Restart the claude-mnemonic worker process. Use this command when experiencing issues with the memory system.
checklist
Generate a custom checklist for the current feature based on user requirements.
clarify
Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.
specify
Create or update the feature specification from a natural language feature description.
analyze
Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.
constitution
Create or update the project constitution from interactive or provided principle inputs.