cortex-init

A command for setting up Claude Code context management in a project by scanning its code and collecting information from the user.

In plain words
What is it for?
Scanning a codebase, interviewing the user, and generating skills, knowledge, and memory.
Why use it?
It creates project guidance and stored context so the coding agent can work with the project’s structure and conventions.

Command

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add commands/brendenclerget/dotcortex/cortex-init
Clone the repo
git clone --depth 1 https://github.com/brendenclerget/dotcortex
Per session 28 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 7,579 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00028 $0.07579
Opus 5 $0.00014 $0.03789
Sonnet 5 $0.00006 $0.01516
Haiku 4.5 $0.00003 $0.00758

Measured 2d ago against content hash 4179a2106007, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

cortex-init scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

commands/cortex-init.md · 727 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 727 lines · 28 tokens per session scan A 4179a2106007

Subscribe to this mod's changes

cortex-init is a command published in the GitHub repository brendenclerget/dotcortex (11 stars, last pushed 3mo ago), with no licence file. It adds 28 tokens to every session and 7,579 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.