Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
git clone --depth 1 https://github.com/idoforgod/Dissertation-Simulator-AgenticWorkflowWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/commands/idoforgod/dissertation-simulator-agenticworkflow/thesis-init)<a href="https://agentmods.dev/commands/idoforgod/dissertation-simulator-agenticworkflow/thesis-init"><img src="https://agentmods.dev/badge/commands/idoforgod/dissertation-simulator-agenticworkflow/thesis-init/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/commands/idoforgod/dissertation-simulator-agenticworkflow/thesis-init"><img src="https://agentmods.dev/badge/commands/idoforgod/dissertation-simulator-agenticworkflow/thesis-init.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00027 | $0.00611 |
| Opus 5.5 | $0.00011 | $0.00244 |
| Sonnet 5.5 | $0.00005 | $0.00122 |
| Haiku 4.5 | $0.00003 | $0.00061 |
Grade A, and why
thesis-init scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 77 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Thesis Initialization
You are starting a new doctoral thesis research project.
Protocol
Step 1: Gather User Input
Ask the user (in Korean) for:
- Research topic or question: What is the research about?
- Research type (select one):
- Quantitative Research (양적연구)
- Qualitative Research (질적연구)
- Mixed Methods Research (혼합연구)
- Undecided (아직 미정)
- Academic field (select one):
- Business/Economics (경영학/경제학)
- Social Sciences (사회과학)
- Humanities (인문학)
- Natural Sciences/Engineering (자연과학/공학)
- Medical/Health Sciences (의학/보건학)
- Education (교육학)
- Other (기타)
- Input mode:
- Mode A: Start with research topic (Default)
- Mode B: Start with research question
- Mode C: Have existing literature review
- Mode D: Learning mode
- Mode E: Upload prior papers
- Mode F: Upload research proposal
- Mode G: Custom input
Step 2: Initialize Project
The --execution-mode value comes from the user's mode selection in /start Step 3.5.
python3 "$CLAUDE_PROJECT_DIR"/.claude/hooks/scripts/checklist_manager.py \
--init \
--project-dir "$CLAUDE_PROJECT_DIR/thesis-output/{sanitized-topic-name}" \
--project-name "{topic}" \
--research-type {type} \
--input-mode {mode} \
--execution-mode {execution_mode}
Where {execution_mode} maps from the user's selection:
- Mode 1 (Interactive) →
interactive - Mode 2 (Autopilot) →
autopilot - Mode 3 (ULW) →
ulw - Mode 2+3 →
autopilot+ulw
Step 3: Set Orchestrator Environment
export THESIS_ORCHESTRATOR=1
Step 4: Confirm to User (Korean)
Display:
- Created project directory and structure
- Selected settings (research type, input mode, academic field, execution mode)
- Total workflow steps (211)
- Next step preview
Step 5: Auto-Continue to Workflow
After displaying the confirmation, automatically execute the /thesis-start protocol without requiring the user to manually invoke it. This ensures a seamless transition from initialization to workflow execution.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 77 lines · 27 tokens per session scan A c2494934f0c0
thesis-init is a command published in the GitHub repository idoforgod/Dissertation-Simulator-AgenticWorkflow (108 stars, last pushed 4mo ago), licensed MIT. It adds 27 tokens to every session and 611 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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