codesage-reindex

codesage-reindex is a command for coding agents from iliaal/codesage. It costs 33 tokens per session (754 once invoked), scanned A, original, MIT.

A command that refreshes an existing CodeSage search index incrementally, meaning it updates only what changed. It can remove leftover search tables when the configured embedding model changes.

In plain words
What is it for?
Refresh a project's index, detect model mismatches, clean obsolete search data, and report the indexing result.
Why use it?
It provides an immediate update when automatic version-control hooks did not run and avoids rebuilding the whole index for routine changes.

Command

Part of the codesage-tools plugin — 1 skill, 10 commands, 2 agents, 1 hook shipped together

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add commands/iliaal/codesage/codesage-reindex
Clone the repo
git clone --depth 1 https://github.com/iliaal/codesage

Or install codesage-tools, the plugin that ships this one along with the rest of its 1 skill, 10 commands, 2 agents, 1 hook.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for codesage-reindex

README.md
[![agentmods](https://agentmods.dev/badge/commands/iliaal/codesage/codesage-reindex.svg)](https://agentmods.dev/commands/iliaal/codesage/codesage-reindex)
Your own site
<a href="https://agentmods.dev/commands/iliaal/codesage/codesage-reindex"><img src="https://agentmods.dev/badge/commands/iliaal/codesage/codesage-reindex.svg" alt="Measured on agentmods" height="20"></a>
Per session 33 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 754 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00033 $0.00754
Opus 5 $0.00016 $0.00377
Sonnet 5 $0.00007 $0.00151
Haiku 4.5 $0.00003 $0.00075

Measured 5d ago against content hash 475167c1d806, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

codesage-reindex scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

plugins/codesage-tools/commands/codesage-reindex.md · 77 lines

How it starts

The opening of the file, as written. The whole thing — 77 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Force incremental CodeSage re-index

Wraps codesage index for cases when you want an immediate refresh without waiting for a commit/merge/checkout hook. If the project's config.toml embedding model no longer matches the active model in the DB, the script detects this and runs codesage cleanup first to drop orphan vec tables from the previous model.

Step 1: Resolve the target project

$ARGUMENTS is the project path. If empty, use the current working directory. Verify it has .codesage/index.db — if not, tell the user to run /codesage-onboard <path> first and stop.

Step 2: Detect model mismatch

Run a dry-run cleanup to detect orphan vec tables left behind from a previous model:

cd <project> && codesage cleanup --dry-run

Output format:

  • Active model: and Active table: header lines reflect what config.toml currently says
  • One keep: line per table that matches the active model
  • One DRY-RUN drop: line per orphan table from a previous model

If any DRY-RUN drop: lines appear, the user switched models in config.toml without wiping the DB. Run the real cleanup:

cd <project> && codesage cleanup

Report which tables were dropped and the DB size reclaimed.

If the dry-run shows only keep: lines, skip the cleanup step entirely — no output, no narration.

Step 3: Pre-count

cd <project> && codesage status

Capture the chunk count so you can report the delta after reindexing.

Step 4: Incremental index

cd <project> && codesage index

Incremental — only changed files get re-processed. On a warm GPU with no changes it's under 5 seconds. On a large delta, minutes.

If the command runs over ~30 seconds, background it and poll.

If the mismatch path ran, the semantic portion will rebuild from scratch for everything (because the cleanup dropped the vec tables). Warn the user up front that this pass is doing real work, not a cheap incremental.

Step 5: Report

Parse the codesage index output. It prints these lines:

Read the full file on GitHub · 77 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 77 lines · 33 tokens per session scan A 475167c1d806

Subscribe to this mod's changes

codesage-reindex is a command published in the GitHub repository iliaal/codesage (20 stars, last pushed yesterday), licensed MIT. It adds 33 tokens to every session and 754 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.