Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add commands/proticom/gnosys/reindex-graphgit clone --depth 1 https://github.com/proticom/gnosysWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/commands/proticom/gnosys/reindex-graph)<a href="https://agentmods.dev/commands/proticom/gnosys/reindex-graph"><img src="https://agentmods.dev/badge/commands/proticom/gnosys/reindex-graph.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00000 | $0.00284 |
| Opus 5 | $0.00000 | $0.00142 |
| Sonnet 5 | $0.00000 | $0.00057 |
| Haiku 4.5 | $0.00000 | $0.00028 |
Grade A, and why
reindex-graph scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
gnosys reindex-graph
Build or rebuild the wikilink graph (.gnosys/graph.json).
Usage
gnosys reindex-graph
Run after bulk imports, link edits, or when graph navigation feels stale.
Behavior
- Resolves configured stores via the project resolver.
- Calls
reindexGraph(resolver, onLog)to scan memories and rebuild graph links. - Prints progress messages from the graph indexer.
- Prints a blank line, then formatted stats via
formatGraphStats(stats).
Output
Progress logs during indexing, then a summary such as:
Graph reindex complete.
Nodes: 120
Edges: 340
...
Errors
No stores configured:
No Gnosys stores found. Run gnosys init first.
Exits with code 1.
Validation
cd gnosys-public
npm run cli -- reindex-graph --help
npx vitest run src/test/reindex-graph-command-handler.test.ts
Related commands
gnosys graph— inspect the current graph.gnosys reindex— rebuild semantic embeddings (separate from graph links).gnosys init— register a project store before reindexing.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 55 lines · 0 tokens per session scan A 2648e27891b5
reindex-graph is a command published in the GitHub repository proticom/gnosys (4 stars, last pushed yesterday), licensed MIT. It costs nothing until one of its globs matches a file; then it loads 284 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other commands, from other repositories
wrap
Close the session cleanly. Update entity state. Capture decisions. Detect momentum shifts.
start
"What accumulated? What's blocking? Where do I begin?".
promote
Move .memory/ artifacts to permanent knowledge locations.
checkpoint
Create or update .memory/ with current conversation state.
cleanup
Delete promoted content from the .memory/ directory.
gains
Show what Kage saved you — tokens, cost, stale memories blocked, stale knowledge caught.