Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add commands/reese-allison/claude-tools/initgit clone --depth 1 https://github.com/reese-allison/claude-toolsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/commands/reese-allison/claude-tools/init)<a href="https://agentmods.dev/commands/reese-allison/claude-tools/init"><img src="https://agentmods.dev/badge/commands/reese-allison/claude-tools/init.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00032 | $0.01396 |
| Opus 5 | $0.00016 | $0.00698 |
| Sonnet 5 | $0.00006 | $0.00279 |
| Haiku 4.5 | $0.00003 | $0.00140 |
Grade A, and why
deep-init scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 151 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Deep Init - Hierarchical CLAUDE.md Generation
Arguments: $ARGUMENTS (optional path for single directory)
Flow:
- No args → Run Phase 1-3
- With path → Skip to Phase 3 for that path only
Phase 1: Discovery
Skip if $ARGUMENTS has path.
Step 1a: Structure
Build the directory tree from git-tracked files:
git ls-files | xargs -n1 dirname | sort | uniq -c | sort -rn
For each directory, capture:
path- Directory pathfiles- List of git-tracked filenames in this dirfile_count- Number of direct filessubtree_file_count- Total files in subtreehas_manifest- Contains package.json, go.mod, Cargo.toml, pyproject.toml, etc.has_readme- Contains README.md
Step 1b: Semantic Context (if tools available)
If you have access to tools that can extract symbol signatures (class/function/type names) without reading full file contents, use them on directories with ≥3 files to gather:
symbols- List of symbol names and their kindsdomain_hints- Inferred from symbol names (e.g., AuthService → auth domain, StripeClient → integration)
This helps identify domain boundaries and integration points that aren't obvious from filenames alone.
Output: JSON tree structure with all directories and metadata (including symbols if available).
Phase 2: Judgment
Skip if $ARGUMENTS has path - use that as sole target.
Examine the full tree recursively. Identify directories warranting CLAUDE.md.
A directory qualifies if it is ANY of:
-
DOMAIN BOUNDARY - Distinct conceptual area (auth, billing, search). Cohesive files that belong together. Someone would work "in this domain."
-
INTEGRATION POINT - Connects to external systems. File names suggest external communication (webhook, client, adapter, api). Own config for external services.
-
SUB-APP - Self-contained application. Has entry points, routes, or own runtime. Could be extracted as standalone.
-
TECHNICAL COMPLEXITY - Specialized knowledge required. Non-obvious patterns that an AI agent would get wrong without guidance.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 3d ago First seen · 151 lines · 32 tokens per session scan A dd5efd3a5266
deep-init is a command published in the GitHub repository reese-allison/claude-tools (9 stars, last pushed 7mo ago), licensed MIT. It adds 32 tokens to every session and 1,396 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other commands, from other repositories
git
Git operations with intelligent commit messages and workflow optimization.
checklist
Generate a custom checklist for the current feature based on user requirements.
clarify
Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.
specify
Create or update the feature specification from a natural language feature description.
analyze
Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.
converge
Assess the current codebase against the feature's spec, plan, and tasks, then append any remaining unbuilt work as new tasks to tasks.md so implement can complete it.