reapply-patches

reapply-patches is a command for Claude Code from SienkLogic/plan-build-run. It costs 9 tokens per session (302 once invoked), scanned A, original, MIT.

A command for restoring local code modifications after an update to the PBR tools. It compares the saved version with the newly installed version and reports conflicts that need a decision.

In plain words
What is it for?
Finding saved patches, skipping changes already included upstream, merging differences, and reviewing conflicts after an update.
Why use it?
It helps preserve local changes when an update replaces the files they were made in.

Command for Claude Code

Written for Claude Code: allowed-tools in frontmatter. Also seen: names the AskUserQuestion tool.

Part of the pbr plugin — 44 skills, 71 commands, 18 agents, 3 hooks shipped together

Good fit Finding saved patches, skipping changes already included upstream, merging differences, and reviewing conflicts after an update.

Compare 6 commands from other repositories ↓
Install with agentmods
npx agentmods add commands/sienklogic/plan-build-run/reapply-patches
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/SienkLogic/plan-build-run

Made for: Claude Code.

Or install pbr, the plugin that ships this one along with the rest of its 44 skills, 71 commands, 18 agents, 3 hooks.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for reapply-patches

README.md
[![agentmods](https://agentmods.dev/badge/commands/sienklogic/plan-build-run/reapply-patches/github.svg)](https://agentmods.dev/commands/sienklogic/plan-build-run/reapply-patches)
Your own site
<a href="https://agentmods.dev/commands/sienklogic/plan-build-run/reapply-patches"><img src="https://agentmods.dev/badge/commands/sienklogic/plan-build-run/reapply-patches/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for reapply-patches

Your own site · 80×15
<a href="https://agentmods.dev/commands/sienklogic/plan-build-run/reapply-patches"><img src="https://agentmods.dev/badge/commands/sienklogic/plan-build-run/reapply-patches.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 9 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 302 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00009 $0.00302
Opus 5 $0.00005 $0.00151
Sonnet 5 $0.00002 $0.00060
Haiku 4.5 $0.00001 $0.00030

Measured 6d ago against content hash f3a97615c336, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

reapply-patches scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

plugins/pbr/commands/reapply-patches.md · 48 lines

What it actually says

PATCHES_DIR="${HOME}/.claude/pbr-local-patches"
if [ ! -d "$PATCHES_DIR" ]; then
  PATCHES_DIR="./.claude/pbr-local-patches"
fi

Read backup-meta.json from the patches directory. If no patches found: "No local patches found. Nothing to reapply." Exit.

2. Show Patch Summary

List all backed-up files with status.

3. Merge Each File

For each file in backup-meta.json:

  1. Read backed-up version (user's modified copy)
  2. Read newly installed version (current file after update)
  3. Compare and merge:
    • Identical: skip (modification incorporated upstream)
    • Different: identify user modifications, apply to new version
    • Conflict: show both versions, ask user which to keep

4. Report

Display merge results table with status per file.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 48 lines · 9 tokens per session scan A f3a97615c336

Subscribe to this mod's changes

reapply-patches is a command published in the GitHub repository SienkLogic/plan-build-run (17 stars, last pushed 5mo ago), licensed MIT. It adds 9 tokens to every session and 302 once invoked, about $0.0000 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.