What is clinical-skills AGENTS.md?

Contributor instructions for Clinical Skills, a repository of AI skills and tools for medical-imaging and healthcare workflows. It covers the repository layout, contribution process, validation, and quality checks.

Use it when adding or changing clinical skills, documentation, integrations, command-line tools, tests, or validation files in the Clinical Skills repository.

It gives agents a consistent way to change the project and check their work before submitting a pull request, including using test-driven development (TDD), where tests are written to guide the code first.

How aizech/clinical-skills configures Codex and OpenCode

Reuse

Borrowing it

Nothing to install: this file belongs to aizech/clinical-skills. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file

curl -O https://raw.githubusercontent.com/aizech/clinical-skills/main/AGENTS.md

Clone the repo

git clone --depth 1 https://github.com/aizech/clinical-skills

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/instructions/aizech/clinical-skills/agents-md/github.svg)](https://agentmods.dev/instructions/aizech/clinical-skills/agents-md)

Your own site

<a href="https://agentmods.dev/instructions/aizech/clinical-skills/agents-md"><img src="https://agentmods.dev/badge/instructions/aizech/clinical-skills/agents-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/instructions/aizech/clinical-skills/agents-md"><img src="https://agentmods.dev/badge/instructions/aizech/clinical-skills/agents-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 1,574 This file is loaded in full into every session.

When invoked 1,574 The same file — it is already loaded in full.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.01574	$0.01574
Opus 5.5	$0.00630	$0.00630
Sonnet 5.5	$0.00315	$0.00315
Haiku 4.5	$0.00157	$0.00157

Measured 2mo ago against content hash 1f9578943617, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

clinical-skills AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 198 lines

How it starts

The opening of the file, as written. The whole thing — 198 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md

Guidelines for AI agents working in this repository. For contributing guidelines, see CLAUDE.md.

Repository Overview

Name: Clinical Skills
GitHub: aizech/clinical-skills
Creator: Corpus Analytica
Focus: Radiological Analytics
License: MIT
Version: 1.0.1 (2026-04-04)
Status: 26 skills, 30+ integration docs, 12 CLI tools, 85 tests

Repository Structure

clinical-skills/
├── .claude-plugin/
│   └── marketplace.json   # Plugin marketplace manifest
├── skills/               # Agent Skills (26 skills)
│   ├── core/             # Foundational skills
│   ├── clinical-documentation/
│   ├── patient-communication/
│   ├── workflow-coordination/
│   ├── analytics-quality/
│   ├── research-evidence/
│   ├── platform-integration/
│   ├── ai-assistants/
│   └── dataset/
├── tools/
│   ├── integrations/     # 30+ platform integration docs
│   ├── clis/            # 12 Python CLI tools
│   │   ├── shared/      # Shared utilities (base_cli, api_client, json_formatter)
│   │   └── tests/       # Comprehensive test suite (85 tests)
├── docs/                 # Development documentation
│   ├── DEVELOPMENT.md
│   ├── TROUBLESHOOTING.md
│   ├── WORKFLOW_EXAMPLES.md
│   ├── CLI_API.md
│   └── DOCKER.md
├── scripts/              # Validation scripts
└── .github/             # GitHub config (5 workflows including CLI tests)

Skill Categories

Category	Skills
Core	modality-detection, radiology-context
Clinical Documentation	radiology-report-analysis, structured-reporting, imaging-study-review
Patient Communication	patient-results-letter, patient-education-material
Workflow Coordination	imaging-referral, followup-tracking, care-gap-closure
Platform Integration	pacs-workflow, pubmed-search, dicom-web-query
AI Assistants	ai-report-assist, ai-detection-pipeline, llm-radiology-use, ai-quality-review
Analytics Quality	radiology-metrics, image-quality-audit, report-quality-review
Research Evidence	guideline-integration, cross-reference-linking, radiology-research
Dataset	radiology-dataset-guide, dataset-preprocessing, model-validation

Read the full file on GitHub · 198 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 198 lines · 1,574 tokens per session scan A 1f9578943617

Subscribe to this mod's changes

clinical-skills AGENTS.md is an instructions file published in the GitHub repository aizech/clinical-skills (6 stars, last pushed 4mo ago), licensed MIT. It adds 1,574 tokens to every session, about $0.0063 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

agent-skills ai-agents clinical-ai clinical-decision-support healthcare-ai llm-agents

clinical-skills AGENTS.md next to 6 instructions from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
clinical-skills AGENTS.mdaizech/clinical-skills	Instructions file	6	4mo ago	MIT	A	1,574	Codex, OpenCode
vscode buildNext.instructions.mdmicrosoft/vscode	Instructions file	195k	yesterday	MIT	A	9,719	GitHub Copilot
next.js AGENTS.mdvercel/next.js	Instructions file	143k	yesterday	MIT	A	7,461	Codex, OpenCode
langchain AGENTS.mdlangchain-ai/langchain	Instructions file	149k	yesterday	MIT	A	4,680	Codex, OpenCode
vscode oss-third-party-notices.instructions.mdmicrosoft/vscode	Instructions file	195k	yesterday	MIT	A	5,516	GitHub Copilot
vscode copilot-instructions.mdmicrosoft/vscode	Instructions file	195k	yesterday	MIT	A	3,093	GitHub Copilot
deepseek-harness AGENTS.mddeepseek-ai/deepseek-harness	Instructions file	274k	2d ago	MIT	A	4,313	Codex, OpenCode

clinical-skills: Instructions file for Codex