clinical-skills AGENTS.md

clinical-skills AGENTS.md is an instructions file for Codex, OpenCode from aizech/clinical-skills. It costs 1,574 tokens per session, scanned A, original, MIT.

Contributor instructions for Clinical Skills, a repository of AI skills and tools for medical-imaging and healthcare workflows. It covers the repository layout, contribution process, validation, and quality checks.

In plain words
What is it for?
Use it when adding or changing clinical skills, documentation, integrations, command-line tools, tests, or validation files in the Clinical Skills repository.
Why use it?
It gives agents a consistent way to change the project and check their work before submitting a pull request, including using test-driven development (TDD), where tests are written to guide the code first.

Instructions file for CodexOpenCode

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add instructions/aizech/clinical-skills/agents-md
Clone the repo
git clone --depth 1 https://github.com/aizech/clinical-skills

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for clinical-skills AGENTS.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/aizech/clinical-skills/agents-md.svg)](https://agentmods.dev/instructions/aizech/clinical-skills/agents-md)
Your own site
<a href="https://agentmods.dev/instructions/aizech/clinical-skills/agents-md"><img src="https://agentmods.dev/badge/instructions/aizech/clinical-skills/agents-md.svg" alt="Measured on agentmods" height="20"></a>
Per session 1,574 This file is loaded in full into every session.
When invoked 1,574 The same file — it is already loaded in full.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.01574 $0.01574
Opus 5 $0.00787 $0.00787
Sonnet 5 $0.00315 $0.00315
Haiku 4.5 $0.00157 $0.00157

Measured 5d ago against content hash 1f9578943617, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-05, from the pricing page.

Security

Grade A, and why

clinical-skills AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 198 lines

How it starts

The opening of the file, as written. The whole thing — 198 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md

Guidelines for AI agents working in this repository. For contributing guidelines, see CLAUDE.md.

Repository Overview

  • Name: Clinical Skills
  • GitHub: aizech/clinical-skills
  • Creator: Corpus Analytica
  • Focus: Radiological Analytics
  • License: MIT
  • Version: 1.0.1 (2026-04-04)
  • Status: 26 skills, 30+ integration docs, 12 CLI tools, 85 tests

Repository Structure

clinical-skills/
├── .claude-plugin/
│   └── marketplace.json   # Plugin marketplace manifest
├── skills/               # Agent Skills (26 skills)
│   ├── core/             # Foundational skills
│   ├── clinical-documentation/
│   ├── patient-communication/
│   ├── workflow-coordination/
│   ├── analytics-quality/
│   ├── research-evidence/
│   ├── platform-integration/
│   ├── ai-assistants/
│   └── dataset/
├── tools/
│   ├── integrations/     # 30+ platform integration docs
│   ├── clis/            # 12 Python CLI tools
│   │   ├── shared/      # Shared utilities (base_cli, api_client, json_formatter)
│   │   └── tests/       # Comprehensive test suite (85 tests)
├── docs/                 # Development documentation
│   ├── DEVELOPMENT.md
│   ├── TROUBLESHOOTING.md
│   ├── WORKFLOW_EXAMPLES.md
│   ├── CLI_API.md
│   └── DOCKER.md
├── scripts/              # Validation scripts
└── .github/             # GitHub config (5 workflows including CLI tests)

Skill Categories

Category Skills
Core modality-detection, radiology-context
Clinical Documentation radiology-report-analysis, structured-reporting, imaging-study-review
Patient Communication patient-results-letter, patient-education-material
Workflow Coordination imaging-referral, followup-tracking, care-gap-closure
Platform Integration pacs-workflow, pubmed-search, dicom-web-query
AI Assistants ai-report-assist, ai-detection-pipeline, llm-radiology-use, ai-quality-review
Analytics Quality radiology-metrics, image-quality-audit, report-quality-review
Research Evidence guideline-integration, cross-reference-linking, radiology-research
Dataset radiology-dataset-guide, dataset-preprocessing, model-validation

Read the full file on GitHub · 198 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 198 lines · 1,574 tokens per session scan A 1f9578943617

Subscribe to this mod's changes

clinical-skills AGENTS.md is an instructions file published in the GitHub repository aizech/clinical-skills (4 stars, last pushed 2mo ago), licensed MIT. It adds 1,574 tokens to every session, about $0.0079 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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