open-scholar-peer: Instructions file for Codex

AGENTS.md

open-scholar-peer AGENTS.md is an instructions file for Codex, OpenCode from amirkiarafiei/open-scholar-peer. It costs 3,133 tokens per session, scanned A, original, MIT.

A project guide for Open ScholarPeer, a collection of prompts, commands, skills, and an MCP server for automated scientific-paper peer review. An MCP server is a program that lets an AI tool use external capabilities or project data.

In plain words
What is it for?
Maintaining the peer-review prompts and adapters, checking the project structure, and regenerating tool-specific instructions after shared-rule changes.
Why use it?
It explains that the project is configuration rather than a conventional application and shows how shared rules are synchronized across supported AI tools.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions subagents; mentions Claude Code; mentions AGENTS.md.

This is amirkiarafiei/open-scholar-peer's own configuration. It tells Codex and OpenCode how to work on open-scholar-peer itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything open-scholar-peer configures →

Reuse

Borrowing it

Nothing to install: this file belongs to amirkiarafiei/open-scholar-peer. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/amirkiarafiei/open-scholar-peer/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/amirkiarafiei/open-scholar-peer

Made for: Codex, OpenCode.

Wrote this? Show the measurements

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Per session 3,133 This file is loaded in full into every session.
When invoked 3,133 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.03133 $0.03133
Opus 5 $0.01566 $0.01566
Sonnet 5 $0.00627 $0.00627
Haiku 4.5 $0.00313 $0.00313

Measured 10d ago against content hash 5f73233c9835, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

open-scholar-peer AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 188 lines

How it starts

The opening of the file, as written. The whole thing — 188 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md — Open ScholarPeer

Init-style instructions for AI agents doing development on this repo. Read this first; depth lives in docs/. (This file is for agents working on OSP itself — NOT the file end users get in their project. A separate user-facing AGENTS.md is generated by the installers for tools that read project-root AGENTS.md (Copilot CLI, Codex, Kimi, Vibe, OpenCode, OpenHands), via scripts/merge_agents_md.sh from extensions/_shared/rules/osp-rules.md.)

What this project is

Open ScholarPeer (OSP) implements the paper "ScholarPeer: A Context-Aware Multi-Agent Framework for Automated Peer Review" as a portable set of skills, slash commands, and an MCP server that install into a user's project across 14 AI tools (Claude Code, Cursor, Gemini CLI, Copilot CLI, Antigravity, Antigravity CLI, Codex CLI, Qwen Code, OpenCode, Junie, Kiro, Kimi Code, Mistral Vibe, OpenHands).

There is no runtime code. OSP is configuration-as-code. The library is the prompts and the sync infrastructure that keeps them consistent across tools.

Commands you will actually run

# After any edit under extensions/_shared/, regenerate adapters:
python3 scripts/sync_adapters.py

# Validate per-tool parity (must pass before any commit touching _shared/):
python3 scripts/test_parity.py

# Smoke-test all 14 installers in temp dirs (must pass before tagging release):
bash scripts/test_install.sh

# Syntax-check shell scripts:
for f in install.sh scripts/*.sh; do bash -n "$f" && echo "  ✓ $f" || echo "  ✗ $f"; done

# AST-check Python files (no formal linter configured):
python3 -c "import ast; [ast.parse(open(f).read()) for f in ['mcp-server/osp_mcp.py','scripts/sync_adapters.py','scripts/merge_mcp_config.py','scripts/test_parity.py']]"

# Run the MCP server standalone (debug mode):
cd mcp-server && python3 -m venv .venv && .venv/bin/pip install -r requirements.txt && .venv/bin/python osp_mcp.py

Architecture (one paragraph)

extensions/_shared/ is the canonical source: 8 commands + 8 skills + rules + defaults + a manifest. scripts/sync_adapters.py regenerates 14 per-tool adapter directories under extensions/.{claude,cursor,gemini,agent,agents,github,junie,kiro,codex,kimi,qwen,vibe,opencode,openhands}/. Per-tool installers (scripts/install_*.sh) copy the adapter into the user's project, run init_brain.sh to scaffold .brain/, run init_mcp.sh to set up a self-contained Python venv at .open-scholar-peer/mcp/, and either auto-merge the MCP server into the tool's config (merge_mcp_config.py) or emit a paste-ready snippet for tools with TOML / global / non-standard configs. State during a review lives at <user-project>/.brain/ (gitignored).

Read the full file on GitHub · 188 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 10d ago First seen · 188 lines · 3,133 tokens per session scan A 5f73233c9835

Subscribe to this mod's changes

open-scholar-peer AGENTS.md is an instructions file published in the GitHub repository amirkiarafiei/open-scholar-peer (27 stars, last pushed 1mo ago), licensed MIT. It adds 3,133 tokens to every session, about $0.0157 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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