aurora-agent: Instructions file for Codex

AGENTS.md

aurora-agent AGENTS.md is an instructions file for Codex, OpenCode from AURORA-NEURO/aurora-agent. It costs 2,081 tokens per session, scanned A, original, Apache-2.0.

Project-wide instructions for AURORA Agent, a research system that selects the smallest set of evidence needed to answer a decision and records what it left out. It is designed for biological research agents.

In plain words
What is it for?
Use it when developing or reviewing the agent, its Rust workspace, evidence selection, evaluation, data changes, or connections to tools that act on the selected context.
Why use it?
It gives contributors shared rules for honest labels, type-safe assumptions, and byte-for-byte repeatable results.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions .claude-plugin; mentions Claude Code.

This is AURORA-NEURO/aurora-agent's own configuration. It tells Codex and OpenCode how to work on aurora-agent itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything aurora-agent configures →

Reuse

Borrowing it

Nothing to install: this file belongs to AURORA-NEURO/aurora-agent. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/AURORA-NEURO/aurora-agent/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/AURORA-NEURO/aurora-agent

Made for: Codex, OpenCode.

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Per session 2,081 This file is loaded in full into every session.
When invoked 2,081 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.02081 $0.02081
Opus 5.5 $0.00832 $0.00832
Sonnet 5.5 $0.00416 $0.00416
Haiku 4.5 $0.00208 $0.00208

Measured 1mo ago against content hash 6e2e80268288, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

aurora-agent AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 162 lines

How it starts

The opening of the file, as written. The whole thing — 162 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AURORA Agent

AURORA Agent is a context harness for biological research agents. Its one idea is that context assembly is a compiler pass, not a retrieval heuristic: a typed decision query compiles into the smallest decision-sufficient evidence region, delivered as a Decision Section and accompanied by a Context Certificate stating exactly what was omitted and whether the omission could have changed the decision.

Everything else in the workspace is downstream of that. Storage exists to make compilation output-sensitive. Evaluation exists to test whether the compiled context was any good. Mutation exists to generate more decisions to test against. The MCP server exists so the compiled context reaches something that can act on it.

The engine crate is bioprism-fiber; the workspace is prefixed bioprism- throughout, from the BioPRISM blueprint it implements.

What we can never compromise on

1. Honest labelling is the product

Every other system can tell you what it included. This one tells you what it left out, and whether that could have mattered. If we lose that, we are a slower retrieval library.

Concretely, and these are non-negotiable:

  • Zero influence is not unknown influence. "Provably cannot matter" and "nobody checked" are different states and must never share a representation. A single unknown-influence group voids a sufficiency claim.
  • Unmeasured is not zero. A capability with no evidence is Unmeasured, categorically distinct from measured-and-poor. There is no score_or_zero.
  • A right answer from an incomplete basis is not a pass. Protected closure is mandatory before any relevance step, so a strategy cannot be credited for guessing correctly from evidence it never had.
  • Instance count is not benchmark count. Report independent equivalence classes. A million paraphrases are a robustness check, not a million benchmarks.

2. Invariants belong in the type system, not in comments

Where a rule can be made unrepresentable, make it unrepresentable. Existing examples to match:

Read the full file on GitHub · 162 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 162 lines · 2,081 tokens per session scan A 6e2e80268288

Subscribe to this mod's changes

aurora-agent AGENTS.md is an instructions file published in the GitHub repository AURORA-NEURO/aurora-agent (1 stars, last pushed 21d ago), licensed Apache-2.0. It adds 2,081 tokens to every session, about $0.0083 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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