Borrowing it
Nothing to install: this file belongs to BioSymphony/cryocore. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/BioSymphony/cryocore/main/AGENTS.mdgit clone --depth 1 https://github.com/BioSymphony/cryocoreWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/biosymphony/cryocore/agents-md)<a href="https://agentmods.dev/instructions/biosymphony/cryocore/agents-md"><img src="https://agentmods.dev/badge/instructions/biosymphony/cryocore/agents-md/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/instructions/biosymphony/cryocore/agents-md"><img src="https://agentmods.dev/badge/instructions/biosymphony/cryocore/agents-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00945 | $0.00945 |
| Opus 5.5 | $0.00378 | $0.00378 |
| Sonnet 5.5 | $0.00189 | $0.00189 |
| Haiku 4.5 | $0.00094 | $0.00094 |
Grade A, and why
cryocore AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 75 lines — stays where its author put it; the contents beside it link to each section on GitHub.
BioSymphony CryoCore Agent Guide
This repo is the public BioSymphony CryoCore control plane. It owns cryo-EM evidence production, map/model validation, heterogeneity review, and structural rendering lanes that should not be coupled to AI design runtimes.
Operating Rules
- Keep durable design docs in
docs/. - Keep campaign specs in
campaigns/<campaign-id>/. - Keep public-safe example manifests and tiny fixtures in
examples/. - Keep reusable module contracts in
modules/. - Keep tool and licensing posture in
references/software-registry.yamlanddocs/tooling-and-licensing.md. - Keep reusable scripts under
scripts/cryocore/. - Use
templates/linear-issue.mdwhen drafting tracker-neutral external-agent issues. - Record durable learnings (tool surprises, failed paths, provider gotchas, doctrine corrections) in
.cryocore-memory/in this checkout (gitignored, never committed) or in your harness's own memory store. See Agent Memory And Learnings for scope, exclusions, harness pointers, and the note shape atskills/cryocore/references/memory-note-template.md. - Do not store API keys, tokens, raw cryo-EM movies, maps, half-maps, private structures, unpublished sequences, model weights, license files, or heavy outputs in this repo.
- Store heavy outputs under ignored directories such as
.runtime/,artifacts/,outputs/, provider volumes, or secure local storage. - Treat ChimeraX as intentionally duplicated with Structure Factory: runtime-gated, noncommercial/commercial-license posture recorded per campaign, and never redistributed in this public repo.
Ownership Boundary
CryoCore owns:
- raw cryo-EM movie intake contracts
- motion correction, CTF, picking, classification, refinement, and map postprocessing plans
- map/model validation and atomic model build lanes
- heterogeneity and conformational-state evidence lanes
- ChimeraX/Coot/PyMOL/Blender/Mol* figure and review scaffolding
- provider-neutral cryo-EM execution contracts for local, RunPod, AWS Batch, SSH/HPC, and neocloud-style backends
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 2mo ago First seen · 75 lines · 945 tokens per session scan A 6e103b3921ab
cryocore AGENTS.md is an instructions file published in the GitHub repository BioSymphony/cryocore (6 stars, last pushed 12d ago), licensed MIT. It adds 945 tokens to every session, about $0.0038 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
cryocore AGENTS.md compared with instructions from other repositories
| Mod | Type | Stars | Last push | Licence | Scan | Tokens | Works with |
|---|---|---|---|---|---|---|---|
| cryocore AGENTS.mdBioSymphony/cryocore | Instructions file | 6 | 12d ago | MIT | A | 945 | Codex, OpenCode |
| vscode buildNext.instructions.mdmicrosoft/vscode | Instructions file | 195k | today | MIT | A | 9,719 | GitHub Copilot |
| next.js AGENTS.mdvercel/next.js | Instructions file | 143k | yesterday | MIT | A | 7,461 | Codex, OpenCode |
| vscode oss-third-party-notices.instructions.mdmicrosoft/vscode | Instructions file | 195k | today | MIT | A | 5,649 | GitHub Copilot |
| langchain AGENTS.mdlangchain-ai/langchain | Instructions file | 149k | today | MIT | A | 4,680 | Codex, OpenCode |
| vscode copilot-instructions.mdmicrosoft/vscode | Instructions file | 195k | today | MIT | A | 3,093 | GitHub Copilot |
| vscode ai-customization.instructions.mdmicrosoft/vscode | Instructions file | 195k | today | MIT | A | 1,907 | GitHub Copilot |